| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,087,932 – 6,088,027 |
| Length | 95 |
| Max. P | 0.996775 |
| Location | 6,087,932 – 6,088,027 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 72.26 |
| Shannon entropy | 0.52359 |
| G+C content | 0.44499 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -19.65 |
| Energy contribution | -20.19 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.98 |
| SVM RNA-class probability | 0.996775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6087932 95 + 27905053 GCAACGAAACAAUAGUUUGUUUGAUCGUUGCAACGCUUGACUUCACAUUUC--CUCUCCCUCGGGCGAAAA------ACAGCUGAAACCGGAAACGGAUCAGA ((((((((((((....)))))...)))))))..(((((((...........--.......)))))))....------....((((..(((....))).)))). ( -29.57, z-score = -3.19, R) >droEre2.scaffold_4770 2227076 103 - 17746568 GCAACGGGACAAUAGCUUGUUUGAUCGUUGCAGCGCUUGAAUUCACAUUAAAAUUCACCCUCGGGCGAAGAAGAAGAACAGCUGAAACCGGAAACGGGUCAGA ((((((((((((....)))))...)))))))..(((((((....................)))))))..............((((..(((....))).)))). ( -28.85, z-score = -1.45, R) >droYak2.chr3R 10122997 95 + 28832112 GCAACGAAACAAUAGCUUGUUUGAUCGUUGUAACGCUUGAGUUCACAUUAC--CUCACCCUCGGGCGAAGA------ACAGCUGAAACCGGAAACGGGUCAGA ((((((((((((....)))))...)))))))..((((((((..........--......))))))))....------....((((..(((....))).)))). ( -30.09, z-score = -2.55, R) >droSec1.super_0 5276355 95 - 21120651 GCAACGAAACAAUAGUUUGUUUGGUCGUUGUAACGCUUGAGUUCACAUUAC--CUCUCCCUCGGGCGAAGA------ACAGCUGAAACUGGAAACGGAUCAGA ((((((((((((....)))))...)))))))..((((((((..........--......))))))))....------....((((..(((....))).)))). ( -27.99, z-score = -1.78, R) >droSim1.chr3R 12216619 95 - 27517382 GCAACGAAACAAUAGUUUGUUUGGUCGUUGUAACGCUUGAGUUCACAUUAC--CUCUCCCUCGGGCGAAGA------ACAGCUGAAACCGGAAACGGAUCAGA ((((((((((((....)))))...)))))))..((((((((..........--......))))))))....------....((((..(((....))).)))). ( -30.19, z-score = -2.40, R) >droMoj3.scaffold_6680 10180393 100 - 24764193 AAAUCGAACCGGCAAUUUGUUUUGU-GUUGCCGAGCAACAAAGUAUAAAAU--AUUCAUUUAAUUUGUUGACUUCAUCCAAACAAGUCGAAUAAUUUUUCAAC ...((((..(((((((.........-)))))))(((((((((...((((..--.....)))).))))))).)).............))))............. ( -18.30, z-score = -1.48, R) >consensus GCAACGAAACAAUAGUUUGUUUGAUCGUUGCAACGCUUGAGUUCACAUUAC__CUCUCCCUCGGGCGAAGA______ACAGCUGAAACCGGAAACGGAUCAGA ((((((((((((....)))))...)))))))..((((((((..................))))))))..............((((..(((....))).)))). (-19.65 = -20.19 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:34 2011