| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,071,031 – 6,071,177 |
| Length | 146 |
| Max. P | 0.652661 |
| Location | 6,071,031 – 6,071,177 |
|---|---|
| Length | 146 |
| Sequences | 12 |
| Columns | 152 |
| Reading direction | reverse |
| Mean pairwise identity | 77.61 |
| Shannon entropy | 0.50174 |
| G+C content | 0.51895 |
| Mean single sequence MFE | -49.34 |
| Consensus MFE | -18.51 |
| Energy contribution | -16.93 |
| Covariance contribution | -1.58 |
| Combinations/Pair | 1.59 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6071031 146 - 27905053 ---GUUUGACCCUCGAUGCAACUUCGGAAUCACUUGCACAGC--GCUGCUUGUAGAACUUCUUGUAGAGUUGCCUCUCCAGGAACUGCAAUCGGUUCUCCAGAUCGGCCCGGG-AGGGUAAAUCAGAGAACCGACGCACCAUGCGCUGCUGC ---...(((..(.(((.......))))..)))...(((((((--(((((((((((...((((((.((((....)))).))))))))))))(((((((((..(((..((((...-.))))..))).))))))))).)))....)))))).))) ( -58.00, z-score = -3.38, R) >droSim1.chr3R 12203426 146 + 27517382 ---GUUUGACCCUCGAUGCAACUUCGGAAUCACUUGCACAGC--GCUGCUUGUAGAACUUCUUGUAGAGUUGCCUCUCCAGGAACUGCAAUCGGUUCUCCAGAUCGGCCCGGG-AGGGUAAAUCAGAGAACCGACGCACCAUGCGCUGCUGC ---...(((..(.(((.......))))..)))...(((((((--(((((((((((...((((((.((((....)))).))))))))))))(((((((((..(((..((((...-.))))..))).))))))))).)))....)))))).))) ( -58.00, z-score = -3.38, R) >droSec1.super_0 5264737 146 + 21120651 ---GUUUGACCCUCGAUGCAACUUCGGAAUCACUUGCACAGC--GCUGCUUGUAGAACUUCUUGUAGAGUUGCCUCUCCAGGAACUGCAAUCGGUUCUCCAAAUCGGCCCGGG-AGGGUAAAUCAGAGAACCGACGCACCAUGCGCUGCUGC ---...(((..(.(((.......))))..)))...(((((((--(((((((((((...((((((.((((....)))).))))))))))))(((((((((.......((((...-.))))......))))))))).)))....)))))).))) ( -55.02, z-score = -3.00, R) >droYak2.chr3R 10110841 146 - 28832112 ---GUUUGACCCUCGAUGCAACUUCGGAAUCACUUGCACAGC--GCUGCUUGUAGAACUUCUUGUAGAGUUGCCUCUCCAGGAACUGCAAUCGGUUCUCCAGAUCGGCCCGAG-AGGGUAAAUCAGAGAACCGACGCACCAUGCGCUGCUGC ---...(((..(.(((.......))))..)))...(((((((--(((((((((((...((((((.((((....)))).))))))))))))(((((((((..(((..((((...-.))))..))).))))))))).)))....)))))).))) ( -58.50, z-score = -3.91, R) >droEre2.scaffold_4770 2215506 146 + 17746568 ---GCUUGACCCUCGAUGCAACUUCGGAAUCACUUGCACAGC--GCUGCUUGUAGAACUUCUUGUAGAGUUGCCUCUCCAGGAACUGCAGUCGGUUCUCCAGAUCCGCCCGAG-AGGGUAGAUCAGAGAACCGACGCACCAUGCGCUGCUGC ---(((((.....))).))..(....)........(((((((--(((((.(((((...((((((.((((....)))).)))))))))))((((((((((..((((..(((...-.)))..)))).)))))))))))))....)))))).))) ( -65.60, z-score = -5.10, R) >droAna3.scaffold_13340 22690899 149 + 23697760 GCAUCCUGACCUUCGAUGCAACUUCGGAAUCACUUGCACAGC--GCUGCUUGUAGAACUUCUUGUACAGCUGCCUCUCCAGGAACUGCAACCGGUUCUCCAGAUCGGCCCUGG-AGGGCAGGUCGGAGAACCGGCGCACCAUGCGCUGCUGC (((((.........)))))..(....)........(((((((--(((((((((((...((((((...((....))...))))))))))))((((((((((.((((.((((...-.)))).)))))))))))))).)))....)))))).))) ( -62.00, z-score = -2.98, R) >dp4.chr2 23373085 146 + 30794189 ---CAUUGGCCUUCGAUGCAACUUCGGAAUCACUUGCACAGC--GCUGCUUGUAGAAUUUCAUAUACAAUUUCUUCUCCAGGAAUUGCAAUCGGUUUUCCAGAUCGGCCCUUG-AGGGCAAAUCGGAGAAACGACGAACCGUUCGCUGCUGC ---...(((..(((((.......))))).)))...(((((((--((.....)).(((((((.....((((((((.....))))))))...(((.((((((.(((..((((...-.))))..))))))))).))).)))..)))))))).))) ( -40.60, z-score = -0.59, R) >droWil1.scaffold_181108 955301 140 - 4707319 ---------UCCGCGAUGCAACUUCGGAAUCACUUGCACAGC--GCUGCUUGUAGAAUUUCUUGUACAAUUGCUUCUCCAGGAAUUGUAAGCGAUUUUCUAGAUCGGCUCUUG-AUGGCAAAUCAGAGAAACGACGAACCAUUCGCUGCUUC ---------...((..((((((....)......)))))..))--((.((.(.(((((..((...(((((((.((.....)).)))))))...))..))))).)(((.((((.(-((.....)))))))...)))..........)).))... ( -34.70, z-score = 0.15, R) >droVir3.scaffold_13047 18155365 148 + 19223366 -ACUACUCAUCCUCGAUGCAACUUCGGAAUCACUUGCACAGC--GCUGCUUGUAGAAUUUCUUGUACAAUUUCUUUUCCAAGAAUUGUAAGCGAUUUUCCAGAUCAGCCCUUG-AAGGCAAAUCGGAGAAACGACGAACCAUUCGCUGCGCU -.............(.((((((....)......))))))(((--((.(((((((.((....)).)))))............((((.((..(((.((((((.(((..(((....-..)))..))))))))).)).)..)).)))))).))))) ( -35.50, z-score = -0.77, R) >droMoj3.scaffold_6540 29062172 148 + 34148556 -GCUAAACAUCCUCGAUGCAACUUCGGAAUCACUUGCACAGC--GCUGCUUGUAGAAUUUCUUGUACAAUUUCUUUUCCAGGAAUUGUAGGCGAUUUUCCAAAUCGGCUCUUG-ACGGCAAAUCGGAGAAACGACGAACCGUUCGCUGCGAU -...........(((.((((((....)......)))))((((--((((.((...(((..((.(.((((((((((.....)))))))))).).))..)))..)).))))....(-((((....(((......)))....))))).))))))). ( -37.10, z-score = -0.18, R) >droGri2.scaffold_14906 5210186 148 - 14172833 -ACUGCUCGUCCUUGAUGCAACUUCGGAAUCACUUGCACAUC--GCUGCUUGUAGAAUCUCUUGAACAAUUUCUUUUCCAAGAAUUGUAAACGAUUUUCCAGAUCUGCUCUCG-AUGGCAAAUCGGAGAAACGACGAACCAUCCGAUGUUCG -...(((((....))).))(((.(((((.((((..(((....--..)))..)).)).....(((.((((((.(((....)))))))))...((.((((((.(((.((((....-..)))).))))))))).)).)))....))))).))).. ( -33.20, z-score = -0.41, R) >anoGam1.chr2R 37075761 133 - 62725911 -------------------AGCUCGCGUAUUACGGCCAGCGCCUGGUCCUGGCUGGACAUGUUGCGGAAGCGCUUCGUGAGGCACUGGUACUUCUGCACGAAAUCGUCAAACGUCAGGUGCACCGGGAAGCCCUCGCGCCGUAUGCGGAUGA -------------------...((.(((((.((((((.(((((((((((.....))))((((((((((((..((((....))....))..)))))))(((....)))..))))))))))))...(((...)))..).))))))))))))... ( -53.90, z-score = -0.49, R) >consensus ___GUUUGACCCUCGAUGCAACUUCGGAAUCACUUGCACAGC__GCUGCUUGUAGAACUUCUUGUACAAUUGCCUCUCCAGGAACUGCAAUCGGUUCUCCAGAUCGGCCCUGG_AGGGCAAAUCAGAGAACCGACGCACCAUGCGCUGCUGC .................(((...((((((((..((((((((....)))((((.(((..................))).))))...)))))..))))).........(((.......)))............)))(((.....))).)))... (-18.51 = -16.93 + -1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:33 2011