| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,056,528 – 6,056,626 |
| Length | 98 |
| Max. P | 0.709021 |
| Location | 6,056,528 – 6,056,626 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 67.41 |
| Shannon entropy | 0.59771 |
| G+C content | 0.37859 |
| Mean single sequence MFE | -16.53 |
| Consensus MFE | -7.63 |
| Energy contribution | -8.42 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.709021 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6056528 98 - 27905053 --------AUUUGUUGC-UCCGCUGCCA-UUGCAGUUCUCGCAACCAUGGCAUAGGUUUUCCUCUAUUUAACUUUUAUUAAAUU-UCCGAUUAAUUUUCCCAAAAAAAG --------....(((((-...(((((..-..)))))....)))))..(((...(((((.((....((((((......)))))).-...))..)))))..)))....... ( -15.60, z-score = -1.49, R) >droEre2.scaffold_4770 2204388 96 + 17746568 ----------UUGUUGCUUCUGCUGGCA-CUGCAGUUCGCGCAACAAAGCCGUCAGUUGUCCUCUAUUUAACUUUGAUUAAAUU-UUCGAUUAACCCUCCCAAAAAAG- ----------(((((((..((((.....-..)))).....)))))))....((.(((((......((((((......)))))).-..))))).)).............- ( -15.50, z-score = -0.24, R) >droYak2.chr3R 10101486 106 - 28832112 UUUUGUUGCUUUGUUGCUUCUGCUGCCA-CUGCAGUUAUCGCUGCCAUGACGCGAGUUGUCCUCUAUUUAACUUUGAUUAAAUU-UACGAGUAACCCUCCCAAAAAAA- ....(((((((.((.((....(((((..-..)))))....)).)).(..((....))..)........................-...))))))).............- ( -18.40, z-score = -0.94, R) >droSec1.super_0 5255728 98 + 21120651 --------UUUUGUUGC-UCUGCUGCCA-UUGCAGUUCUCGCAAUCAUGGCACGAGUUGUCCUCUAUUUAACUUUGAUUAAAUU-UCCGAUAAAUUUUCCCAAAAAAAA --------(((((..((-(((((((..(-((((.......)))))..))))).))))((((....((((((......)))))).-...))))........))))).... ( -17.20, z-score = -1.41, R) >droSim1.chr3R 12194467 98 + 27517382 --------UUUUGUUGC-UCUGCUGCCA-UUGCAGUUCUCGCAACCAUGACACGAGUCGUCCUCUAUUUAACUUUGAUUAAAUU-UCCGAUUAAUUUUUCCAAAAAAAA --------....(((((-...(((((..-..)))))....))))).(((((....)))))............((((...(((((-.......)))))...))))..... ( -16.20, z-score = -1.70, R) >droVir3.scaffold_13047 18145337 90 + 19223366 ------AUUUUAGUUG--UUCGCCGAUAUUUGAUACCCUUCCUGCCACUGGCAGGACUAUCUUUUGCAUAGCUUAAAUUCUCUCACUUAAGUAAAACU----------- ------((((.(((((--(..((.((.....((((....(((((((...))))))).)))).)).)))))))).))))....................----------- ( -16.30, z-score = -1.42, R) >consensus ________UUUUGUUGC_UCUGCUGCCA_UUGCAGUUCUCGCAACCAUGGCACGAGUUGUCCUCUAUUUAACUUUGAUUAAAUU_UCCGAUUAAUUCUCCCAAAAAAA_ ............(((((....(((((.....)))))....)))))........((((((.........))))))................................... ( -7.63 = -8.42 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:32 2011