| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,854,116 – 6,854,230 |
| Length | 114 |
| Max. P | 0.541229 |
| Location | 6,854,116 – 6,854,230 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 70.45 |
| Shannon entropy | 0.56175 |
| G+C content | 0.40754 |
| Mean single sequence MFE | -24.37 |
| Consensus MFE | -12.80 |
| Energy contribution | -12.83 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6854116 114 + 23011544 UUUGUGUACUGCCA-AGAGAUCUUUGGCCACACCAACAAAACACGUGUGGAGUGCGGUUGCCGCACAUUUAUUGUUCUCCGUUUUUACCUUUAAUUAACUUGAGAAAAAAGGAAA ...((((...((((-((.....)))))).)))).(((((..((....))..((((((...)))))).....))))).(((.((((((..((.....))..))))))....))).. ( -23.80, z-score = 0.25, R) >droEre2.scaffold_4929 15772964 115 + 26641161 UUAGUGUACUUCCAGAGAGCACUAUGGCCACACUAACGAAACACGUGUGGAGUGCGGUUGCCGCACAUUUAUUAUUCUCCGUUUUUACCUUUAAUUUAAUUGAGAAAAAAGGAAC .((((((.(((...))).))))))(((((((((...........)))))).((((((...))))))............)))......(((((..(((.....)))..)))))... ( -28.10, z-score = -1.70, R) >droYak2.chr2L 16274116 115 - 22324452 UUAGUGUACUUCCAGAGCCCACUCUGGCCACACUAACAAAACACGUGUGGAGUGCGGUCGCCGCGCAUUUAUUAUUCUCCGAUUUAACCAUUAAUUUACUUGGGAAAAAAGGAAC ...........((((((....))))))((((((...........)))))).((((((...))))))...........(((..(((..(((..........)))..)))..))).. ( -32.00, z-score = -2.26, R) >droSec1.super_3 2394290 112 + 7220098 --CUUGUAGAUCCA-AGAGAUCUCUGGCCACACCAACAAAACACGUGUGGAGUGCGGUUGCCACACGUUUAUUGUUCUCCUUUUUUACCUUUAAUUAACUUGAGAAAAAAGGAAG --.....(((((..-...)))))..((.....))(((((.(.((((((((..........)))))))).).))))).(((((((((..(............)..))))))))).. ( -24.80, z-score = -0.62, R) >droSim1.chr2L 6653648 104 + 22036055 --CUUGUUCAUCCA-AGAGAUCACUGGCCACACCAACAAAACACGUGUGGAGUGCGGUUGCCGCACGUUUAUUAUUCUCCGUUUUUACCUUUAAUUAACUUGAGAAG-------- --((((......))-))..........((((((...........)))))).((((((...))))))........(((((.(((.(((....)))..)))..))))).-------- ( -22.30, z-score = -0.79, R) >droGri2.scaffold_15126 4544660 93 + 8399593 UCGAUAUACUACAA------UUUCAUCAUUUACCGCCGAAGCACGUGUGAAGU--GGUCGUUGUACAUUUCACGUUUAU--UUUCUAGUGUUUUUAUACACAA------------ ..((((.((.....------..............((....))....(((((((--(.........)))))))))).)))--).....((((......))))..------------ ( -15.20, z-score = -0.14, R) >consensus UUAGUGUACUUCCA_AGAGAUCUCUGGCCACACCAACAAAACACGUGUGGAGUGCGGUUGCCGCACAUUUAUUAUUCUCCGUUUUUACCUUUAAUUAACUUGAGAAAAAAGGAA_ .........................((((((((...........)))))).((((((...)))))).....................)).......................... (-12.80 = -12.83 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:19 2011