| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,030,216 – 6,030,331 |
| Length | 115 |
| Max. P | 0.576207 |
| Location | 6,030,216 – 6,030,331 |
|---|---|
| Length | 115 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.80 |
| Shannon entropy | 0.69988 |
| G+C content | 0.55273 |
| Mean single sequence MFE | -39.69 |
| Consensus MFE | -17.31 |
| Energy contribution | -15.87 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.68 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6030216 115 + 27905053 ---AAAAAAAACCCGC-AUUGGUUUACGGAUUGCUCAUGCACUUUCUGUAGAGCUGCGUGCGUCGCCAGCGGCAUCGGGAAAUCACUCCAUUGACCGUCUGCACUUUAUGCGGCAUGCA- ---...........((-((...((((((((.(((....)))...))))))))((((((((.((.((..((((((...(((......)))..)).))))..))))..)))))))))))).- ( -39.00, z-score = -1.58, R) >droGri2.scaffold_14906 5166571 119 + 14172833 AACGCCAUUGCUCUGCCAAUGGCUUACGGGUAGCUCAGGCACUUUUUGUAGAGCUGCGUGCGCCUCCAGCGGCAGCGCUGAAUAUCACCGUUACGUGUGCGGAUAUUGUGCGGCACGCA- ...(((((((......)))))))..(((((((((((..(((.....))).)))))))(((((((......))).)))).........))))...((((((.(........).)))))).- ( -47.40, z-score = -0.75, R) >droMoj3.scaffold_6540 29017263 119 - 34148556 AGCUCCAGCCCCUAGUCGACACCCUACGGAUAGCUCAGGCACUUUUUGUAGAGCAGCGUGCGCCUCCAGCGGCAGUACUGAACCUCGCCCACAGGCGUUUGCCUCUUGUGCAGCACGCA- .((((..(((.(((..((........))..)))....)))((.....)).)))).(((((((((......))).((((.((..(.((((....))))...)..))..)))).)))))).- ( -39.70, z-score = -0.38, R) >droVir3.scaffold_13047 18115049 110 - 19223366 -------GCCUUUUGC--AUAUUCUACGGAUAGCUUAGGCACUUUUUGUAGAGCUGCGUACGUCGCCAGCGACAGCGCUGAAUAUCGCCCAUCGGCGAUUUGAUGUUGUGGGGCACGCA- -------(((......--...(((((((((..((....))....)))))))))(..((.(((((..(((((....)))))...((((((....))))))..)))))))..)))).....- ( -37.80, z-score = -0.91, R) >droWil1.scaffold_181108 914878 112 + 4707319 ------AACUAAAUGU-UGCAUCUUACGGAUUGCUUAGACACUUUUUGUAUGCAUGUGUGCGUUGCCAGCGGCACCGCGAAAUGCUGCCAUGCCGAGUUUGAAUGGUUCUGGGUGUACA- ------.......(((-.((((((...(((((..((((((((.....))..(((((.(((((((....(((....)))..))))).)))))))...))))))..))))).)))))))))- ( -32.40, z-score = 0.09, R) >droPer1.super_0 10520896 106 - 11822988 ------------CCCU-AUCCGCCUACGGAUUGCUGAGGCACUUUCUGUAGAGUUGCGUGCGCCGCCAGCGGCACCGGGAGAUGCUGCCGUUCACCGUGUGCGUCACAUGGGGCAUGCA- ------------....-....(((((((((.(((....)))...))))))).))(((((((((((....))))..(((.((...)).)))....(((((((...))))))).)))))))- ( -42.40, z-score = -0.14, R) >dp4.chr2 23332993 106 - 30794189 ------------CCCC-AUCCGCCUACGGAUUGCUGAGGCACUUUCUGUAGAGUUGCGUGCGCCGCCAGCGGCACCGGGAGAUGCUGCCGUUCACCGUGUGCGUCACAUGGGGCAUGCA- ------------((((-((....(((((((.(((....)))...))))))).((.(((..(((.(..(((((((.((.....)).)))))))..).)))..))).))))))))......- ( -43.70, z-score = -0.35, R) >droAna3.scaffold_13340 22658947 111 - 23697760 -------GACAGGAGC-UCCCGAUUACGGCUCGCUCAUGCACUUUCUGUAGAGCUGCGUGCGCCGCCAGCGGCAGCGGGAGAUGCUACCGUUUACAGUCUGGACGACGUGGGGCAUGCA- -------.....((((-(.........)))))((((.((((.....)))))))).((((((.((((.(((((.((((.....)))).)))))....(((.....))))))).)))))).- ( -44.20, z-score = -0.39, R) >droYak2.chr3R 10074434 115 + 28832112 ---AACUAAGACCCGU-AUUGCUUUACGGAUUGCUCAGGCACUUUCUGUAGAGCUGCGUGCGUCGCCAGCGGCAUUGGGAAAUCACUCCAUUGACCGUCUGCCUUUUGUGCGGCAUGCA- ---......(((((((-(..((((((((((.(((....)))...)))))))))))))).).)))(((.((((((.((((.......)))).)).))))..(((....).))))).....- ( -40.40, z-score = -1.49, R) >droEre2.scaffold_4770 2177827 115 - 17746568 ---AACUAAAACCCGU-GUUGCUUUACGAAUUACUCUUGCACUUUUUGUAGAGCUGCGUGUGUUUCCAACGGCAUCGGGAAAUCCAUCCAUUGACCGUUAGUUCUUUGCGGGGCAUGCA- ---.............-((.((((((((((..............)))))))))).))((((((..(.(((((((...(((......)))..)).))))).((.....)))..)))))).- ( -32.04, z-score = -1.15, R) >droSec1.super_0 5229555 116 - 21120651 ---AAAAAAAACCGGC-ACUGGUUUACGGAUUGCUCAUGCACUUUCUGUAGAGCUGCGUGCGUCGCCAGCGGCAUCGGGAAAUCACUCCAUUGACCGUCUGCACUUUGUGCGGCAUGCAG ---...........((-(..(.((((((((.(((....)))...)))))))).)))).(((((.(((.((((((...(((......)))..)).))))..((((...)))))))))))). ( -39.00, z-score = -0.94, R) >droSim1.chr3R 12166926 115 - 27517382 ---AAAAAAAACCGGC-AUUGGUUUACGGAUUGCUCAUGCACUUUCUGUAGAGCUGCGUGCGUCGCCAGCGGCAUCGGGAAAUCACUCCAUUGACCGUCUGCACUUUGUGCGGCAUGCA- ---...........((-(..(.((((((((.(((....)))...)))))))).)))).(((((.(((.((((((...(((......)))..)).))))..((((...))))))))))))- ( -38.20, z-score = -0.77, R) >consensus ______AAAAACCCGC_AUUGGUUUACGGAUUGCUCAGGCACUUUCUGUAGAGCUGCGUGCGUCGCCAGCGGCAUCGGGAAAUCCCGCCAUUGACCGUCUGCAUUUUGUGCGGCAUGCA_ .......................(((((((..((....))....)))))))....(((((((((......)))....(..(((......)))..).................)))))).. (-17.31 = -15.87 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:28 2011