| Sequence ID | dm3.chr3R |
|---|---|
| Location | 6,003,003 – 6,003,067 |
| Length | 64 |
| Max. P | 0.961734 |
| Location | 6,003,003 – 6,003,067 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 73.90 |
| Shannon entropy | 0.43517 |
| G+C content | 0.35250 |
| Mean single sequence MFE | -15.96 |
| Consensus MFE | -12.56 |
| Energy contribution | -12.32 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.961734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 6003003 64 + 27905053 ------------CAAUUUAAACAAAGGUUUAAUGUACUCGUGGUUUACUGUAUAACACUGUACAUAAGCUGUGACC ------------....((((((....)))))).....(((..(((((.((((((....)))))))))))..))).. ( -14.80, z-score = -1.61, R) >droEre2.scaffold_4770 2156968 75 - 17746568 AAAUCUAAAUGAUGUUUUUCACA-AGGUUGUUUGAACCCAUGGUUUACUGUACAGCCUUGUACAUAAGCUGCGGCU ...........((((.....(((-(((((((.((((((...))))))....)))))))))))))).(((....))) ( -19.50, z-score = -1.80, R) >droYak2.chr3R 10052896 76 + 28832112 AGAUUUAAAAAAUGUUUUUAUCAAAGGUUUUUUGUACUCGUGGUUUACUGUACAACACUGUACAUAAGCUGCGGCU .....((((((((.(((.....))).))))))))...(((..(((((.((((((....)))))))))))..))).. ( -19.70, z-score = -2.79, R) >droSec1.super_0 5208317 64 - 21120651 ------------CAAAUGAAACAUAGGUUUAAUGUACUCGUGGUUUACUGUACAACACUGUACAUAAGCUGUGACU ------------........((((.......))))..(((..(((((.((((((....)))))))))))..))).. ( -14.90, z-score = -1.28, R) >droSim1.chr3R 12144135 64 - 27517382 ------------CAAUUAAAACAAAGGUUUAAUGUACUCCUGGUUUACUGUACAACACUGUACAUAAGCUGUGACU ------------......((((....)))).......((.(((((((.((((((....))))))))))))).)).. ( -10.90, z-score = -0.25, R) >consensus ____________CAAUUUAAACAAAGGUUUAAUGUACUCGUGGUUUACUGUACAACACUGUACAUAAGCUGUGACU .....................................((((((((((.((((((....)))))))))))))))).. (-12.56 = -12.32 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:25 2011