| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,993,972 – 5,994,038 |
| Length | 66 |
| Max. P | 0.934543 |
| Location | 5,993,972 – 5,994,038 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 86.84 |
| Shannon entropy | 0.20911 |
| G+C content | 0.41632 |
| Mean single sequence MFE | -12.50 |
| Consensus MFE | -9.43 |
| Energy contribution | -10.37 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5993972 66 - 27905053 AAUUUGCUCUUGUGUAUAAUUUUACGAUCGCUCUGCAAACCUAUAGCGAUACCCUCUAGAGUAAAC ..((((((((..((((......))))((((((.((......)).)))))).......)))))))). ( -14.60, z-score = -3.14, R) >droSec1.super_0 5199393 66 + 21120651 AAUUUGCUAUUGUGUAUAAUUUUACGAUCGCUCUGCAAACCUAUAGCGAUCCCCUCUAGAGUAAAC ..((((((.....(((......)))(((((((.((......)).)))))))........)))))). ( -13.60, z-score = -2.92, R) >droYak2.chr3R 10042652 65 - 28832112 AAUUCGCUUCUGUGUAUAA-CUUACGAUCGCCCAGCAUACCUAUAGCGAUCCCCUCUAAAGUAAAC .....((((..(.(((...-..)))((((((..((.....))...))))))....)..)))).... ( -9.10, z-score = -1.54, R) >droEre2.scaffold_4770 2147859 65 + 17746568 CAUUUGCGCCUGUGUAUAA-UUUGCGAUCGCUCAGCAUACCUAUAGCGAUCCCCCCCAAAGUAAAC ..(((((((..((.....)-)..))(((((((.((.....))..))))))).........))))). ( -12.70, z-score = -2.18, R) >consensus AAUUUGCUCCUGUGUAUAA_UUUACGAUCGCUCAGCAAACCUAUAGCGAUCCCCUCUAAAGUAAAC ..(((((((....(((......)))((((((..............)))))).......))))))). ( -9.43 = -10.37 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:24 2011