| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,980,620 – 5,980,717 |
| Length | 97 |
| Max. P | 0.983734 |
| Location | 5,980,620 – 5,980,717 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 60.75 |
| Shannon entropy | 0.73572 |
| G+C content | 0.53015 |
| Mean single sequence MFE | -33.06 |
| Consensus MFE | -12.00 |
| Energy contribution | -13.26 |
| Covariance contribution | 1.26 |
| Combinations/Pair | 1.65 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.983734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5980620 97 + 27905053 GUCACUAGACACUGGCUGUUGUCCACUUUAGCUGGCCAGAUUGGCUGACAGU----UGACUCGGUUCGAUC-CGAACGAUCGAUUGGCGUAUAUUGGCAGCG------- (((....))).((((((((((.......)))).))))))....((((.((((----..(((((((.(((((-.....)))))))))).))..)))).)))).------- ( -31.50, z-score = -1.22, R) >droSim1.chr3R 12122562 95 - 27517382 GUCACCAGCCUCUGGCUGUUGGCCACUUUAGCUGGCCAGAU-GGCUGACAGU----UAGCUCGCUUCGAUC-CGAACGAUCGAUUGGCGUAUAU-GGCAGCG------- .....(((((((((((((((((.....))))).))))))).-)))))...((----((...((((((((((-.....))))))..))))....)-)))....------- ( -37.20, z-score = -2.08, R) >droSec1.super_0 5186345 89 - 21120651 --------CCUCUGGCUGUUGGCCACUUUAGCUGGCCAGAUUGGCUGACAGU----UAGCUCGCUUCGAUC-CGAACGAUCGAUUGGCGUAUAUUGGCAGCG------- --------..((((((((((((.....))))).)))))))...((((.((((----.....((((((((((-.....))))))..))))...)))).)))).------- ( -32.90, z-score = -1.85, R) >droYak2.chr3R 10029265 97 + 28832112 GUCACUAGCCACUGGCCGUUGGCUACUUUAGCUGGCCGGAUUGGCUGACAGU----UAGCCCGCUUCGAUC-UCAACGAUCGAUUGGCGUAUAUUGGCAGCG------- ((((...((((((((((...(((((...)))))))))))..)))))))).((----(.(((((((((((((-.....))))))..))))......)))))).------- ( -38.90, z-score = -2.76, R) >droEre2.scaffold_4770 2134803 90 - 17746568 -------GUCACUAGC---UGGCCACUUUAGCUGGCCAGAUUGGCUGACUGUUGC-UAGCCCGCUUCGAUC-UGAACGAUCGAUUGGCGUAUAUUGGCAGCG------- -------(((((((((---(((((((....).))))))).)))).)))).(((((-(((..((((((((((-.....))))))..))))....)))))))).------- ( -40.40, z-score = -4.37, R) >droWil1.scaffold_181130 2749397 98 - 16660200 --------ACUCUGAUUUGGCUCUGAUUUAAAGUUUUAAAUUG--UGGCAGUUAA-CAGUUAACUUGGCCAGCGUCCGAUUCAACGUCAUCGAUUCGCAAUGCCAGCCA --------.........(((((........(((((...(((((--(........)-))))))))))(((..(((..((((........))))...)))...)))))))) ( -22.00, z-score = -0.37, R) >anoGam1.chr3R 4997573 82 - 53272125 ------------------GCAAUGGUUGGUGCUGACCAGAAUAGACGACGGUUGACUGGGUUGCUUUCAGG-CAGGCGG-CAACGGCCAUAUUUUUGUGGCA------- ------------------......((((.((((..((.(((..(((..(((....))).)))...))).))-..)))).-)))).((((((....)))))).------- ( -28.50, z-score = -1.52, R) >consensus _______GCCACUGGCUGUUGGCCACUUUAGCUGGCCAGAUUGGCUGACAGU____UAGCUCGCUUCGAUC_CGAACGAUCGAUUGGCGUAUAUUGGCAGCG_______ ...........(((((...((((.......)))))))))....((((.((((......(((....((((((......))))))..)))....)))).))))........ (-12.00 = -13.26 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:21 2011