| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,974,473 – 5,974,582 |
| Length | 109 |
| Max. P | 0.802025 |
| Location | 5,974,473 – 5,974,582 |
|---|---|
| Length | 109 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 60.57 |
| Shannon entropy | 0.75770 |
| G+C content | 0.38691 |
| Mean single sequence MFE | -27.21 |
| Consensus MFE | -5.54 |
| Energy contribution | -5.59 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.73 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.20 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.802025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5974473 109 - 27905053 AAACAGCACGUUGGAUUGCACAAGUGCAGUGUGAUUGGUAACGAAAAUU--UACGCAAAUGUACACACAUACAUAUAUAUACCUUCUCUUUGCAAUUUGGCCCAAAAUGCA .....(((..((((...((.(((((((((.(.((..((((.((......--..))...(((((......))))).....)))).)).).)))).)))))))))))..))). ( -24.60, z-score = -0.64, R) >droGri2.scaffold_15074 3805803 105 + 7742996 AAUGAAUGAAUACAUUUAUAUGUAUGU-GUGUGUGUGUGUAUGCACACAUAUACACAAAUCCACAC----ACAUACAUCCAUCUCA-AUUUAUAAUUCAACUACAGUUACA .(((((((....)))))))((((((((-(((((((((((((((....))))))))))....)))))----))))))))........-........................ ( -33.00, z-score = -4.09, R) >droMoj3.scaffold_6540 19250367 101 + 34148556 AAAAAUUGCUGGCCAGUCAGCGUUUGG-UGGUCCACACUCUAGCACACACACACGCACACGCAUAC----ACAAAUGU--AGCACAUAUUUAUAACUUGGCCAAAAAU--- .........(((((((...((((.(((-((((..........)).))).)).))))....((.(((----(....)))--))).............))))))).....--- ( -24.40, z-score = -1.63, R) >droSim1.chr3R 12116895 93 + 27517382 AAACAGCACGUUGGAUUGCACAAGUGCAGAGUGAUUGGUAACGAAAAUU--CAUACA----------------UACAUAUACCAUCUCUUUGCAAUUUGGCCCAAAAUGCG .....(((..((((...((.(((((((((((.(((.((((.........--......----------------......))))))).)))))).)))))))))))..))). ( -26.80, z-score = -3.16, R) >droSec1.super_0 5180355 93 + 21120651 AAACAGCACGUUGGAUUGCACAAGUGCAGAGUGAUUGGUAACGAAAAUU--CAUGCA----------------UACAUAUACCUUCUCUUUGCAAUUUGUCCCAAAAUGCG .....(((..((((...(.((((((((((((.((..((((..((....)--)(((..----------------..))).)))).)).)))))).)))))))))))..))). ( -24.60, z-score = -2.18, R) >droYak2.chr3R 10023147 100 - 28832112 AAACAGCACGUUGGAUUGCACAAUUGCAGAGUGAUUGGAACCGAAAGUU--UACGCAAAUG---------UUUUACGUUUGCCUUCUCUUUGCAAUUUGGCCCAAAAUGCU ....((((..((((...((..((((((((((.((...(((.(....)))--)..(((((((---------.....)))))))..)).))))))))))..))))))..)))) ( -31.80, z-score = -2.96, R) >droEre2.scaffold_4770 2122020 101 + 17746568 AAACAGCACGUUGGAUUGCACAAAUGCAGAGUGAUUGGAACCGAAAAUUGAAAUGCAAAUG----------CAUACAUAUGCCUUCUAGUUGCAAUUUGGACCAAUAUGCA .....(((..((((.(((((....))))).(..(((((((........((..((((....)----------))).))......)))))))..)........))))..))). ( -25.24, z-score = -1.32, R) >consensus AAACAGCACGUUGGAUUGCACAAGUGCAGAGUGAUUGGUAACGAAAAUU__CACGCAAAUG__________CAUACAUAUACCUUCUCUUUGCAAUUUGGCCCAAAAUGCA .....(((..((((.(((((....))))).....(((....))).........................................................))))..))). ( -5.54 = -5.59 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:21 2011