| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,971,979 – 5,972,069 |
| Length | 90 |
| Max. P | 0.810935 |
| Location | 5,971,979 – 5,972,069 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 82.03 |
| Shannon entropy | 0.23468 |
| G+C content | 0.52200 |
| Mean single sequence MFE | -17.94 |
| Consensus MFE | -14.43 |
| Energy contribution | -14.77 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5971979 90 + 27905053 GGGGCUGCAUAUUAACAGGUAGCUCAUAACGUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCAUCUGCACCACAUCGACAUCCACAU .(((((((..........))))))).....(((((..........((((((....)))))).......)))))................. ( -18.03, z-score = -0.06, R) >droSec1.super_0 5177988 76 - 21120651 GGUGCUGCAUAUUAAC--------------GUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCACCUGCACCACAUCCACAUCCACAU ((((((((((......--------------)))))..........((((((....))))))........)))))................ ( -17.90, z-score = -2.62, R) >droSim1.chr3R 12114484 70 - 27517382 GGUGCUGCAUAUUAAC--------------GUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCACCUGCACCACAUCCACAU------ ((((((((((......--------------)))))..........((((((....))))))........)))))..........------ ( -17.90, z-score = -2.67, R) >consensus GGUGCUGCAUAUUAAC______________GUGUAACCCACCAUCGUGGUUACCAAACCGCCUCCACCUGCACCACAUCCACAUCCACAU (((((.........................(((.....)))....((((((....))))))........)))))................ (-14.43 = -14.77 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:20 2011