| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,963,977 – 5,964,068 |
| Length | 91 |
| Max. P | 0.854182 |
| Location | 5,963,977 – 5,964,068 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 79.75 |
| Shannon entropy | 0.36131 |
| G+C content | 0.40018 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -16.36 |
| Energy contribution | -16.30 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5963977 91 - 27905053 GCCCACUGUAUAUGAGGAAUAUAAUAUGAGAUUGGUGUUUGU-CAAAUGCUAAUUAGUUUCAUUAUAUCUGCCAGCCACGAGUGCAGUGGGG .((((((((((.((.((.(((((..(((((((((((....((-.....))..)))))))))))))))).......)).)).)))))))))). ( -27.60, z-score = -2.22, R) >droSim1.chr3R 12105207 91 + 27517382 GCCCACUGUAUAUGAGGAAUAUAAUAUGAGAUUGGUGUUUGU-CAAAUGCUAAUUAGUUUCAUUAUAUCUGCCAGCCACGAGUGCAGUGGGG .((((((((((.((.((.(((((..(((((((((((....((-.....))..)))))))))))))))).......)).)).)))))))))). ( -27.60, z-score = -2.22, R) >droSec1.super_0 5170181 91 + 21120651 GCCCACUGUAUAUGAGGAAUAUAAUAUGAGAUUGGUGUUUGU-CAAAUGCUAAUUAGUUUCAUUAUAUCUGCCAGCCACGAGUGCAGUGGGG .((((((((((.((.((.(((((..(((((((((((....((-.....))..)))))))))))))))).......)).)).)))))))))). ( -27.60, z-score = -2.22, R) >droYak2.chr3R 10012600 89 - 28832112 GCCCACUG--UAUGAGGAAUAUAAUAUGAGAUUGGUGUUUGU-CAAAUGCUAAUUAGUUUCAUUAUAUCUGCCAGCCACGAGUGCAGUGGGG .(((((((--(((..((.(((((..(((((((((((....((-.....))..))))))))))))))))...))........)))))))))). ( -25.80, z-score = -1.73, R) >droEre2.scaffold_4770 2111242 89 + 17746568 GCCCACUG--UAUGAGGAAUAUAAUAUGAGAUUGGUGUUUGU-CAAAUGCUAAUUAGUUCCAUUAUAUCUGCCAGCCACAAGUGCAGUGGGG .(((((((--(((..((......((((((((((((((((...-..)))))))))).......)))))).......))....)))))))))). ( -25.13, z-score = -1.34, R) >dp4.chr2 7549186 72 - 30794189 ---------AUAAUAUGAGUGUACGAU-AGAUUGGCGUUUGUCCGAAUGCUAAUUAGUUUCAUUAUAUCU-CAAGGGGUGGGU--------- ---------........((((...(((-.(((((((((((....))))))))))).))).)))).(((((-....)))))...--------- ( -16.10, z-score = -1.14, R) >droPer1.super_0 1384379 72 - 11822988 ---------AUAAUAUGAGUGUACGAU-AGAUUGGCGUUUGUCCGAAUGCUAAUUAGUUUCAUUAUAUCU-CAAGGGGUGGGU--------- ---------........((((...(((-.(((((((((((....))))))))))).))).)))).(((((-....)))))...--------- ( -16.10, z-score = -1.14, R) >consensus GCCCACUG_AUAUGAGGAAUAUAAUAUGAGAUUGGUGUUUGU_CAAAUGCUAAUUAGUUUCAUUAUAUCUGCCAGCCACGAGUGCAGUGGGG .(((((((.......((.(((((((....(((((((((((....)))))))))))......)))))))...))...((....))))))))). (-16.36 = -16.30 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:19 2011