| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,940,723 – 5,940,823 |
| Length | 100 |
| Max. P | 0.828152 |
| Location | 5,940,723 – 5,940,823 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 69.47 |
| Shannon entropy | 0.56221 |
| G+C content | 0.45854 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -10.57 |
| Energy contribution | -11.18 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.828152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5940723 100 + 27905053 UUCCUGAUAGCCAAUACUUCCUAUUUGUAUAGGGAGAGUCAUCUGUCGCUGGUUGACUUCUGUUUUACAGAAAGACCUUCUGCUAUCUGGCACUCCAGAC--------- .....(((((...((.((((((((....)))))))).))...)))))((.((((...(((((.....))))).))))....))..(((((....))))).--------- ( -29.80, z-score = -2.25, R) >droAna3.scaffold_13340 6503813 96 + 23697760 -UCUCAAUUGUCAAUACAUCCUAUUUGCAUAUACU---ACAUUAAGUGUCAUCUGUCCCCAGUGUCUUGUUUACUUGAGCCGGGGGCUUCUGCCCCCGGC--------- -..((((.((.(((.((((.......(((.(((((---......)))))....))).....)))).)))..)).))))(((((((((....)))))))))--------- ( -29.00, z-score = -3.41, R) >droEre2.scaffold_4770 2087265 95 - 17746568 UUCCUGAUAGCCAAUACUUCCUAUUUAUAUACGAA--GUCAUCCGCCGCGGGUUGACUUCUGUUU-ACAGAAAGACCU-UUCCUAUCUG-CACUCCAUGC--------- .....(((((.....(((((.(((....))).)))--))..........(((((...(((((...-.))))).)))))-...)))))..-..........--------- ( -17.70, z-score = -1.23, R) >droYak2.chr3R 9988750 105 + 28832112 UUCCUGAUAGCCAAUACUUCCUAUUUAUAAACGGA--GUCAUCCGGCGCAGGCUGACUUCUGUUU-ACAGAAAGACCUACUGCUAUCUG-CACUUCAUACAGUCCAUAC .....((((((.........((.(((.((((((((--((((.((......)).)))).)))))))-).))).)).......))))))((-.(((......))).))... ( -23.49, z-score = -1.79, R) >droSec1.super_0 5147512 106 - 21120651 UUCCUGAUAGCCAAUACUUCCUCUUUGUGCAGGGAGAGUCAUCUGCAGCGGGUUGACUUCUGUUUUACGGAAAGACAUUCUGCUAUCUGGCACUCCAUGC---CCAUAC .....((((((.....(((((((.....).)))))).(((.((((.((((((......))))))...))))..))).....)))))).((((.....)))---)..... ( -28.30, z-score = -0.57, R) >droSim1.chr3R 12082100 106 - 27517382 UUCCUGAUAGCCAAUACUUCCUCUUUGUGCAGGGAGAGUCAUCUGCAGCGGGUUGACUUCUGUUUUACAGAAAGACCUUCUGCUAUCUGGCACUCCAUGC---CCAUAC .........................((.(((.((((.((((...((((.(((((...(((((.....))))).))))).))))....)))).)))).)))---.))... ( -33.30, z-score = -2.18, R) >consensus UUCCUGAUAGCCAAUACUUCCUAUUUGUAUAGGGA__GUCAUCUGCCGCGGGUUGACUUCUGUUUUACAGAAAGACCUUCUGCUAUCUGGCACUCCAUGC_________ .....((((((..........................((((.((......)).))))(((((.....))))).........))))))...................... (-10.57 = -11.18 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:18 2011