| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,937,433 – 5,937,524 |
| Length | 91 |
| Max. P | 0.949343 |
| Location | 5,937,433 – 5,937,524 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 56.16 |
| Shannon entropy | 0.73169 |
| G+C content | 0.31798 |
| Mean single sequence MFE | -17.81 |
| Consensus MFE | -8.57 |
| Energy contribution | -8.18 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5937433 91 + 27905053 -------UACAUUCCUUAUAAAAGGUGUUCACUGCAUUUG--------UAAUUAUA------------GUAACAUAAAGAAUUCGCGCAUAAGUGUGAAUAUUAAUAGAAAUAAAAUU -------....(((.((((((.((((((.....)))))).--------...)))))------------)...........((((((((....)))))))).......)))........ ( -13.00, z-score = -0.61, R) >droSim1.chr3R 12078627 87 - 27517382 -------UACAUUCCUUAUAAAGGGUGUUCACUGCACUCG--------UAAAUA----------------AUUGUAAAGAAUUCGCGCAUAAGUGUGAAUAUUAAUAGAAAUUAUAUU -------((((....((((...((((((.....)))))).--------...)))----------------).))))....((((((((....)))))))).................. ( -17.10, z-score = -1.92, R) >droSec1.super_0 5144496 85 - 21120651 -------UACAUUCCUUAUAAAGGGUGUUCACUGCACUCG--------UAAAUA----------------AUUGUAAAGAAUUCACGCAUA--UAUUCAUAAUCAUAAUCAAAUAAUU -------...((((.((((((.((((((.....)))))).--------......----------------.)))))).)))).........--......................... ( -9.30, z-score = -0.90, R) >droYak2.chr3R 9985453 99 + 28832112 -------UAAAUCCCUUAUAAAGCGUGUUCACUGCGCUCGCUUUUAGGUAAUUUUA------------AUAGUCUAAAGAAUUCGCGUAUGCAUGUGAAUCGUAAUAGAAAUGGGAUU -------..((((((...((..(((.((((((((((..((((((((((..((....------------))..))))))).....)))..)))).)))))))))..)).....)))))) ( -26.10, z-score = -2.74, R) >droEre2.scaffold_4770 2084009 118 - 17746568 AAGAAUUAAAAUCCCUUAUAAAUAGUGUUCACUGCACUUGUUUUUGGGUAAUUAUAAUAACCUUUUGCGUAUUAUUAAGAAUUUGCGUAUGCAUGCUAAUCGUCAUAGAAAUGGGAUU .........((((((........(((((.....))))).((((((((((.((....)).)))...(((((((..............)))))))............))))))))))))) ( -19.14, z-score = 0.36, R) >droGri2.scaffold_14624 2280566 85 + 4233967 -------AGACCGGCGUCUAGGAAUUGGUCUCUUCAAUUA--------GCGUUGCA-------------UGCCUCAUAUAAUUUGGGUGCAACAACAAAUGAUGAAGAGCGGU----- -------.((((((..(....)..))))))((((((.(((--------..((((..-------------(((((((.......)))).))).))))...))))))))).....----- ( -22.20, z-score = -0.76, R) >consensus _______UAAAUUCCUUAUAAAGGGUGUUCACUGCACUCG________UAAUUAUA_____________UAUUAUAAAGAAUUCGCGCAUAAAUGUGAAUAAUAAUAGAAAUAAAAUU ......................((((((.....)))))).........................................((((((((....)))))))).................. ( -8.57 = -8.18 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:17 2011