| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,903,895 – 5,904,015 |
| Length | 120 |
| Max. P | 0.566875 |
| Location | 5,903,895 – 5,904,015 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 69.52 |
| Shannon entropy | 0.59594 |
| G+C content | 0.49288 |
| Mean single sequence MFE | -33.08 |
| Consensus MFE | -20.76 |
| Energy contribution | -22.12 |
| Covariance contribution | 1.35 |
| Combinations/Pair | 1.39 |
| Mean z-score | -0.36 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5903895 120 - 27905053 UCCCAGAUUGCAAACGAGCGCCUAGCGACGACUAUGUUUGUUGCACACG-ACUAUCUGACGUCAAUGAGAGGGUUUUGUAAUUUGUGGGCGUCAGAGUGGGCGUGGGCCUUUCCAGAGCCG .(((((((((((...((((.(((.(((((((......)))))))....(-((........)))......)))))))))))))))).))(((((......))))).(((((....)).))). ( -37.00, z-score = -0.01, R) >droSim1.chr3R 12044879 119 + 27517382 UUCCAGAUUGCAAACGAGCGCCUAGCGACGACUAUGUUUGUUGCACACG-ACUAUCUGACGUCAAUGACAGGGUUUUGUAAUUUUUGGGCGUCAGAGUGGGCG-GGGCCUUUCCAGAGCCG ..((.....((......))((((((((((((......))))))).....-....(((((((((....((((....))))........))))))))).))))))-)(((((....)).))). ( -37.50, z-score = -0.78, R) >droSec1.super_0 5111014 120 + 21120651 UUCCAGAUUGCAAACGAGCGCCUAGCGACGACUAUGUUUGUUGCACACG-ACUAUCUGACGUCAAUGACAGGGUUUUAUAAUUUGUGGGCGUCAGAGUGGGCGUGGGCCUUUCCAGAGCCG .................((((((((((((((......))))))).....-....(((((((((....(((((.........))))).))))))))).))))))).(((((....)).))). ( -38.50, z-score = -0.94, R) >droYak2.chr3R 9950319 120 - 28832112 UCCGAGAUUGCAAUCGAGCGCCUAGCAACGACUAUGUUUGUUGCACACG-ACUAUCUGACGUCAAUGACAGGGUUUUGUAAUUUGUGGGCGUCAGAGGGGGCGUGGCCCCUCCCAGAGCUG .(((((((((((...((((.(((.(((((((......)))))))....(-((........)))......))))))))))))))).)))((....((((((......)))))).....)).. ( -37.70, z-score = -0.00, R) >droEre2.scaffold_4770 2050023 108 + 17746568 ------AUCGCAAAUAAGCACCUAGCGACGACUAUGUUUGUUGCACACG-ACUAUCUGACGUCAAUGACACGGUUUUCUGACUUGUGGGCGUCAGAGUGGGCGUGGACCAUCCCG------ ------...((......)).....(((((((......))))))).((((-.((((((((((((....(((.((((....))))))).))))))))).))).))))..........------ ( -34.30, z-score = -1.08, R) >droAna3.scaffold_13340 6468247 92 - 23697760 UGAAAAAAUGCAAUCUUUUGUUU--UUUCCAAUAAACCCAAGGCAGAUGCGGAAAUUAUUAGCAACAGCAAAGCUGAGUAAUAU-UAUUGGUUAG-------------------------- ....((((.((((....)))).)--)))(((((((.......((....))....(((((((((.........))))).)))).)-))))))....-------------------------- ( -13.50, z-score = 0.64, R) >consensus UCCCAGAUUGCAAACGAGCGCCUAGCGACGACUAUGUUUGUUGCACACG_ACUAUCUGACGUCAAUGACAGGGUUUUGUAAUUUGUGGGCGUCAGAGUGGGCGUGGGCCUUUCCAGAGCCG .................((((((((((((((......)))))))..........(((((((((.......(((((....)))))...))))))))).)))))))................. (-20.76 = -22.12 + 1.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:10 2011