| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,874,417 – 5,874,509 |
| Length | 92 |
| Max. P | 0.864379 |
| Location | 5,874,417 – 5,874,509 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 96.45 |
| Shannon entropy | 0.04885 |
| G+C content | 0.33218 |
| Mean single sequence MFE | -14.14 |
| Consensus MFE | -13.89 |
| Energy contribution | -13.67 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5874417 92 + 27905053 --GAAAUAUUCCAAUAUUCCAAUUGGAAGUUUAGUGCGAAUAACCAGAAAAGCAGAACAAAGUGAAAUUAAAACAUAGUCCAAUAAGGGCCAGU --......(((((((......)))))))((((..(((..............)))))))...................((((.....)))).... ( -13.94, z-score = -1.53, R) >droSec1.super_0 5080448 94 - 21120651 AAGAAAUAUUCCAAUAUUCCAAUUGGAAGUUUAGUGCGAAUAACCAGAAAAGCAAAACAAAGUGAAAUCAAAACUUAGUCCAAUAAGGGCCAGU ........(((((((......)))))))((((..(((..............))))))).((((.........)))).((((.....)))).... ( -14.24, z-score = -1.42, R) >droSim1.chr3R 12015986 94 - 27517382 AAGAAAUAUUCCAAUAUUCCAAUUGGAAGUUUAGUGCGAAUAACCAGAAAAGCAAAACAAAGUGAAAUCAAAACUUAGUCCAAUAAGGGCCAGU ........(((((((......)))))))((((..(((..............))))))).((((.........)))).((((.....)))).... ( -14.24, z-score = -1.42, R) >consensus AAGAAAUAUUCCAAUAUUCCAAUUGGAAGUUUAGUGCGAAUAACCAGAAAAGCAAAACAAAGUGAAAUCAAAACUUAGUCCAAUAAGGGCCAGU ........(((((((......)))))))((((..(((..............)))))))...................((((.....)))).... (-13.89 = -13.67 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:09 2011