| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,830,189 – 6,830,305 |
| Length | 116 |
| Max. P | 0.993268 |
| Location | 6,830,189 – 6,830,305 |
|---|---|
| Length | 116 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 86.21 |
| Shannon entropy | 0.28041 |
| G+C content | 0.40817 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -23.23 |
| Energy contribution | -23.39 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.60 |
| SVM RNA-class probability | 0.993268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6830189 116 + 23011544 --CGAAUCCCAUUUCCCCGGCCCGCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGAC --((((..((........)).....((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...............)))).. ( -26.40, z-score = -2.21, R) >droSim1.chr2L 6629574 116 + 22036055 --CGAAUCCCAUUUCCCCGGCCCGCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGAC --((((..((........)).....((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...............)))).. ( -26.40, z-score = -2.21, R) >droSec1.super_3 2370098 116 + 7220098 --CGAAUCCCAUUUCCCCGGCCCGCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGAC --((((..((........)).....((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...............)))).. ( -26.40, z-score = -2.21, R) >droYak2.chr2L 16248488 118 - 22324452 ACCGAAUCCCAUUUCCCCGGCCCGCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGAC ..((((..((........)).....((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...............)))).. ( -26.70, z-score = -2.29, R) >droEre2.scaffold_4929 15748136 116 + 26641161 --CGAAUCCCAUUUCCCCGGCCCGCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGAC --((((..((........)).....((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))...............)))).. ( -26.40, z-score = -2.21, R) >droAna3.scaffold_12916 8416356 110 + 16180835 --------CUUGCUCCGGCUGGCUGUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGAC --------...(((......))).(((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))).................... ( -26.30, z-score = -1.28, R) >dp4.chr4_group5 319562 109 + 2436548 ---------CCGCCCUGCUUUUCUCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGAC ---------................((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))..................... ( -24.00, z-score = -2.47, R) >droPer1.super_5 4816820 109 + 6813705 ---------CCGCCCUGCUUUUCUCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGAC ---------................((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))..................... ( -24.00, z-score = -2.47, R) >droWil1.scaffold_180772 1982627 93 - 8906247 -------------------------UGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGAC -------------------------((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))..................... ( -23.90, z-score = -2.98, R) >droVir3.scaffold_12963 5352329 93 - 20206255 -------------------------UGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUACCCGAGUGCGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUCCAUUUCGAC -------------------------((((((((((((((((.(((..((((.........))))...))).)))))))..........)))))))))..................... ( -22.60, z-score = -2.89, R) >droMoj3.scaffold_6500 14546630 93 - 32352404 -------------------------UGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGCGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUCCAUUUCGAC -------------------------((((((((((((((((.(((..((((.........))))...))).)))))))..........)))))))))..................... ( -22.60, z-score = -2.50, R) >droGri2.scaffold_15126 4516110 93 + 8399593 -------------------------UGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUCCAUUUCGAC -------------------------((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))..................... ( -23.90, z-score = -3.01, R) >consensus _________CAUUUCCCCGGCCCGCUGUGUGUUUUCUGUUUUGUCAUGCUCCAUUUAGCCGAGUGUGGACCGAACAGAUGUUCUAUUUAAACGCACAUUAUUAUUAUUUCAUUUCGAC .........................((((((((((((((((.(((((((((.........)))))).))).)))))))..........)))))))))..................... (-23.23 = -23.39 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:14 2011