| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,853,813 – 5,853,894 |
| Length | 81 |
| Max. P | 0.899464 |
| Location | 5,853,813 – 5,853,894 |
|---|---|
| Length | 81 |
| Sequences | 3 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 88.14 |
| Shannon entropy | 0.16017 |
| G+C content | 0.54657 |
| Mean single sequence MFE | -13.04 |
| Consensus MFE | -11.90 |
| Energy contribution | -11.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.899464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5853813 81 + 27905053 CCCAUUCCACCCAAUCCC-----CCAUCUCCAUUCCUUGUGAAUUUCGCACCGGACUCCAGACCCUCGCGAGCAGUUAAAACUGCA ..................-----...(((....(((.((((.....))))..)))....))).........(((((....))))). ( -12.70, z-score = -1.72, R) >droEre2.scaffold_4770 1997838 80 - 17746568 CCUAUUCCACCCAAUCCG------AAUCCCCAUUCGUCGCCAAUUUCGCACCGGACUCCAGACCCUCGCGAGCAGUUAAAACUGCA ................((------(((....))))).........((((...((........))...))))(((((....))))). ( -14.10, z-score = -1.98, R) >droYak2.chr3R 9899051 86 + 28832112 CCCAUUCCACCCAAUCCCAGUCCCAAUACCCAUUCCUCGUGAAUUUCGCACCGGACUCCAGACCCUCGCGAGCAGUUAAAACUGCA ....................................((((((...((.............))...))))))(((((....))))). ( -12.32, z-score = -1.48, R) >consensus CCCAUUCCACCCAAUCCC_____CAAUCCCCAUUCCUCGUGAAUUUCGCACCGGACUCCAGACCCUCGCGAGCAGUUAAAACUGCA .............................................((((...((........))...))))(((((....))))). (-11.90 = -11.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:07 2011