| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,848,548 – 5,848,609 |
| Length | 61 |
| Max. P | 0.999536 |
| Location | 5,848,548 – 5,848,609 |
|---|---|
| Length | 61 |
| Sequences | 7 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 57.41 |
| Shannon entropy | 0.80018 |
| G+C content | 0.41477 |
| Mean single sequence MFE | -15.07 |
| Consensus MFE | -9.87 |
| Energy contribution | -10.24 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.99 |
| SVM RNA-class probability | 0.999536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5848548 61 - 27905053 GGGUUCAAUAAAGUCGAGGCAACGGCUUCGAAUUUGGAUCAAGAUUAUUUUUUAGAAAGGA----------- .(((((((.....(((((((....)))))))..))))))).....................----------- ( -16.20, z-score = -3.26, R) >droSec1.super_0 5050841 61 + 21120651 GCGUUCAAUAAAGUCGAGGCAACUGCCUCGAAUUUGGACCAAGAUUAAUUUUUAGAAAGGA----------- (.((((((.....(((((((....)))))))..))))))).....................----------- ( -18.10, z-score = -3.16, R) >droSim1.chr3R 11989994 61 + 27517382 GCGUUCAAUAAAGUCGAGGCAACUGCUUCGAAUUUGGACCAAGAUUAAUUUUUAGAAAGGA----------- (.((((((.....(((((((....)))))))..))))))).....................----------- ( -15.40, z-score = -2.24, R) >droMoj3.scaffold_6540 31134081 72 - 34148556 AAGUGCAGUGGAGUUCAGCUCAGUGCAAUAAACCUGCGUCCAGGGCAGUCCAGUAUACGCAGUUAACAAUGC ...((((.((.((.....)))).))))......((((((....((....)).....)))))).......... ( -16.70, z-score = -0.02, R) >droYak2.chr3R 9893736 59 - 28832112 GUGUUCAAUAAAGUCGAGGCAAUGGCUUCGAAUUUGGACCAAGAUGGAAUUUGCAAGGA------------- (.((((((.....(((((((....)))))))..)))))))...................------------- ( -15.00, z-score = -1.65, R) >anoGam1.chrX 18017876 59 + 22145176 AAGUUCAAUGCA---CACGCGAAAGGAAAGGGUGUUGGUUUGGUUUUAUUUUCGAUAAACGA---------- .....((((((.---....(....)......))))))(((((.............)))))..---------- ( -6.42, z-score = 1.47, R) >droEre2.scaffold_4770 1992518 52 + 17746568 GUGUUCAAUAAAGUCGAGGCAACGGCCUCGAAUUUGGACCAAGAUUGAGUUU-------------------- (.((((((.....(((((((....)))))))..)))))))............-------------------- ( -17.70, z-score = -3.32, R) >consensus GAGUUCAAUAAAGUCGAGGCAACGGCUUCGAAUUUGGACCAAGAUUAAUUUUUAAAAAGGA___________ ..((((((.....(((((((....)))))))..))))))................................. ( -9.87 = -10.24 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:05 2011