| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,836,866 – 5,836,960 |
| Length | 94 |
| Max. P | 0.755655 |
| Location | 5,836,866 – 5,836,960 |
|---|---|
| Length | 94 |
| Sequences | 10 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 68.70 |
| Shannon entropy | 0.57151 |
| G+C content | 0.54801 |
| Mean single sequence MFE | -28.98 |
| Consensus MFE | -17.26 |
| Energy contribution | -17.34 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755655 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5836866 94 + 27905053 ------------GCAUCUUGUUCCUCCUUGGCAACAUGGGACUGUUGGGUAGCUUCUCCAUGUCCCACUCUAAGGAGCUCUCCUUACUAGCCACGCUUGGGGCUUU ------------.......(((((..(.((((....((((((...((((.......)))).))))))...((((((....))))))...)))).)...)))))... ( -31.00, z-score = -1.53, R) >droSec1.super_0 5039352 94 - 21120651 ------------GCAUCUUGUUCCUCCUUGGCAACAUGGGACUGUUGGGCAGCUUCUCCAUGUCCCACUCCAAGGAGCUCUCCUUGCUAGCCACGCUUGGGGCUUU ------------.......(((((..(.((((....((((((...((((.......)))).))))))...((((((....))))))...)))).)...)))))... ( -32.30, z-score = -0.98, R) >droYak2.chr3R 9885369 94 + 28832112 ------------GCAUUUUGUUCCUUCUUGGCAACAUGGGACUGUUGGGCAGCUUCUCCAUGUCCCACUCCAAGGAGCUCUCCUUGCUAGCCACGCUUGGAGCUUU ------------.......(((((..(.((((....((((((...((((.......)))).))))))...((((((....))))))...)))).)...)))))... ( -33.30, z-score = -2.01, R) >droEre2.scaffold_4770 1980850 94 - 17746568 ------------GCAUCUUGUUCCUCCUUGGCAACAUGGGACUGUUGGGCAGCUUCUCCAUGUCCCACUCCAAGGAACUCUCCUUACUAGCCACGCUUGGGGCUUU ------------.......(((((..(.((((....((((((...((((.......)))).))))))....(((((....)))))....)))).)...)))))... ( -29.30, z-score = -1.20, R) >droAna3.scaffold_13340 6397667 82 + 23697760 ------------GCAUUUUAUUCCGCCUGGGCGGCAUGGGGCUGUUGGGUAACUUCUCCAUAUUCCACUCCAAGGAACUCUCUUUGCUGACCAC------------ ------------...............(((.((((((((((..(((....)))..)))))).((((.......))))........)))).))).------------ ( -19.60, z-score = 0.31, R) >droPer1.super_19 1034691 82 - 1869541 ------------GUACUUUGUUGCGUCGUGGCGGCAUGGGACUGUUGGGCAGCUUCUCCAUGUCCCACUCCAGGGAGCUCUCCUUGCUGGCCGC------------ ------------..........(((((((((.((((((((((((.....)))..)).)))))))))))..((((((....))))))..)).)))------------ ( -30.50, z-score = -0.34, R) >dp4.chr2 25667559 82 - 30794189 ------------GCACUUUGUUGCGUCGUGGCGGCAUGGGACUGUUGGGCAGCUUUUCCAUGUCCCACUCCAGGGAGCUCUCCUUACUGGCCGC------------ ------------(((......)))...(((((((..((((((...((((.......)))).))))))..))(((((....)))))....)))))------------ ( -30.60, z-score = -0.73, R) >droWil1.scaffold_181089 6827957 82 - 12369635 ------------GUAGUUUGUUUCGACGUGGCGGCAUGGGACUAUUCGGCAUCUUUUCCAUGUCCCAUUCCAAGGAACUCUCCUUGGAGACAGU------------ ------------.....(((((((((.((((.(((((((((..............)))))))))))))))((((((....))))))))))))).------------ ( -29.24, z-score = -2.68, R) >droVir3.scaffold_13047 13072202 93 + 19223366 AUUGUUUGCUUGUGGGUAAGCGACGGCGCGGCGCCAUUGGGCUGUUGGGCAACUUUUCCAUGUCCCAUUCCAAAGAGCCCUCCUUGCUGGUUG------------- .(((((((((....)))))))))((((.(((((.....(((((.(((((((.........))))).......)).)))))....)))))))))------------- ( -29.01, z-score = 0.63, R) >droMoj3.scaffold_6540 31121819 93 + 34148556 AUGGUUUGAUUACGGGUAUGCGACGCCGCAAUGGUAUUGGGCUAUUAGGUAGCUUUUCCAUAUCCCAUUCCAGGGAGCCUUCCUUACUGGCUG------------- .(((..((.....(((((((((....)))).(((....(((((((...)))))))..))))))))))..)))...((((.........)))).------------- ( -24.90, z-score = 0.50, R) >consensus ____________GCAUUUUGUUCCGCCGUGGCGGCAUGGGACUGUUGGGCAGCUUCUCCAUGUCCCACUCCAAGGAGCUCUCCUUGCUGGCCAC____________ ............................((((....((((((...((((.......)))).))))))...((((((....))))))...))))............. (-17.26 = -17.34 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:02:02 2011