| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,792,278 – 5,792,371 |
| Length | 93 |
| Max. P | 0.628851 |
| Location | 5,792,278 – 5,792,371 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 66.17 |
| Shannon entropy | 0.55106 |
| G+C content | 0.43865 |
| Mean single sequence MFE | -21.09 |
| Consensus MFE | -5.53 |
| Energy contribution | -5.25 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.628851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5792278 93 + 27905053 CUCUAGCAUAUAGUACUAUAUGC-UAUAUACACA--------UAUAUGUAGAACAACAACAACAACAACAGCGACCGGCAUUAACUUC-GCUGGGGCAAGAGC ((((((((((((....)))))))-)...((((..--------....))))....................((..(((((.........-))))).)).)))). ( -21.60, z-score = -2.83, R) >droEre2.scaffold_4770 1936284 79 - 17746568 CUCUAGCACAUAGUUCUAUACAU--------------------AUAUGUAGAACAACAACAACAAC---AGCAACCGGCAUUAACUUC-GCUGGGGCAAGAGC ((((.((.....((((((((...--------------------...))))))))............---.....(((((.........-))))).)).)))). ( -21.40, z-score = -4.22, R) >droYak2.chr3R 9840143 102 + 28832112 CUCUAGCAUAUAGUACUAUAUGUAUAUAUACACAAACAUAUAUGUAUGUAGAACAACAACAACAACAACAGUAACCGGCAUUAACUUC-GCUGGGGCAAGAAC .(((.((.....((.((((((((((((((........)))))))))))))).))....................(((((.........-))))).)).))).. ( -22.60, z-score = -2.87, R) >droSec1.super_0 4995075 90 - 21120651 CUCUGGCAUAUAGUACUAUAUGC-UAUAUACACA--------UAUAUUUAGAACAACAACAACAAC---AGCGACCGGCAUUAACUUU-GCUGGGGCAAGAGC ((((((((((((....)))))))-).........--------........................---.((..((((((.......)-))))).)).)))). ( -23.30, z-score = -3.72, R) >dp4.chr2 25611891 75 - 30794189 ----------CACUGCCAC-UGC-------CACA---------UCAGGCAAGCCAGCC-UAAGUACAACAACAACCGGCAUAAACUUUAGCUGUGGCAAGAGC ----------...((((((-(((-------(...---------...))))....(((.-.((((...................))))..)))))))))..... ( -18.81, z-score = -0.55, R) >droPer1.super_19 977187 75 - 1869541 ----------CACUGCCAC-UGC-------CACA---------UCAGGCAAGCCAGCC-UAAGUACAACAACAACCGGCAUAAACUUUAGCUGUGGCAAGAGC ----------...((((((-(((-------(...---------...))))....(((.-.((((...................))))..)))))))))..... ( -18.81, z-score = -0.55, R) >consensus CUCUAGCAUAUAGUACUAUAUGC_______CACA_________AUAUGUAGAACAACAACAACAACAACAGCAACCGGCAUUAACUUC_GCUGGGGCAAGAGC ....................(((.......................(((......)))................(((((..........))))).)))..... ( -5.53 = -5.25 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:57 2011