| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,824,119 – 6,824,213 |
| Length | 94 |
| Max. P | 0.644860 |
| Location | 6,824,119 – 6,824,213 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 74.42 |
| Shannon entropy | 0.49307 |
| G+C content | 0.50056 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -10.41 |
| Energy contribution | -11.14 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6824119 94 + 23011544 CUGUGCGGACAUUGGGGCGGAAAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGCUGGACCACAGAUACACAGAUAC----------AGAUACGGCUGCGAACGG------------ .....((....(((.(((.(.....((..((((..(((((....)))))....(((.....))).......)))))----------)....).))).))).)).------------ ( -19.00, z-score = -0.37, R) >droSim1.chr2L 6623526 93 + 22036055 CUGUGCGGACAU-GGGGCGGAAAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGCUGGACCACAGAUACACAGAUAC----------AGAUACGGUUGCGAAUGG------------ (((((......(-((..(((.......(....)..(((((....)))))....)))..)))......)))))....----------..................------------ ( -17.60, z-score = 0.02, R) >droSec1.super_3 2364089 93 + 7220098 CUGUGCGGACAU-GGGGCGGAAAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGCUGGACCACAGAUACACAGAUAC----------AGAUACGGCUGCGAACGG------------ (((((....)))-)).((((.........((((..(((((....)))))....(((.....))).......)))).----------........))))......------------ ( -19.07, z-score = -0.49, R) >droYak2.chr2L 16242396 101 - 22324452 CUGUGCGGACAU-GGGGCGGAAAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGCUGGACCACAGAUACACAGAUACCCAGAUAC--AGAUACGGCUGCGAACGG------------ ((((((((...(-(...(.......(((.((((..(((((....)))))....(((.....))).......)))).))).....--.)...)).))))..))))------------ ( -23.32, z-score = -0.82, R) >droEre2.scaffold_4929 15742085 101 + 26641161 CUGUGCGGACAU-GGGGCGGAAAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGCUGGACCACAGAUACACAGAUACGCAGAUAC--AGAUACGGCUGCGAACGG------------ (((((......(-((..(((.......(....)..(((((....)))))....)))..)))......)))))...(((((...(--......).))))).....------------ ( -24.80, z-score = -1.93, R) >droAna3.scaffold_12916 8410618 115 + 16180835 CGGUGUGGACAU-GGGGCAGGAAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGCUGAACCACAGAUACACAGAUACAGGGAUGCAGAGAUACGGAUACGGAUACGGGUGCGAAAGG ..(((((....(-((..(((.......(....)..(((((....)))))....)))..)))....))))).....................((.(..((....))..).))..... ( -24.60, z-score = -1.65, R) >droPer1.super_5 4809700 92 + 6813705 CUGUGCGGACAUUGGGGCGGACAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGCUGAACCACAGAUACACAGAUACCCGGAUACGGGGCCAG------------------------ (((((.......(((..(((.(.....(....)..(((((....)))))...))))..)))......)))))...((((....)))).....------------------------ ( -25.82, z-score = -1.55, R) >dp4.chr4_group5 312434 92 + 2436548 CUGUGCGGACAUUGGGGCGGACAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGCUGAACCACAGAUACACAGAUACCCGGAUACGGGGCCAG------------------------ (((((.......(((..(((.(.....(....)..(((((....)))))...))))..)))......)))))...((((....)))).....------------------------ ( -25.82, z-score = -1.55, R) >droWil1.scaffold_180772 1972340 93 - 8906247 CUGUGCGGACAU-GGAACGGACAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGC-GAACCACAGAGAUACUGAUACGAGCUACAAUAGAUGAGGG--------------------- .(((.((.....-....)).)))......((((..(((((....))))).((((-......(((.....)))......)))).....))))....--------------------- ( -18.40, z-score = -1.37, R) >droVir3.scaffold_12963 5344511 83 - 20206255 CCGUGUGGACAU-GG--CGGACAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGC-GAACCACAGA--UACGGAAACGAGUGCGCACGGA--------------------------- (((((((.((..-..--........(((...(((.(((((....)))))....)-)).)))....--..((....)).)).))))))).--------------------------- ( -29.20, z-score = -3.80, R) >droMoj3.scaffold_6500 14537206 83 - 32352404 CCGUGUGGACAU-GA--CGGACAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGC-GAACCACAGA--UACGGAAACGAAUGCGCACGGA--------------------------- (((((((.....-..--........(((...(((.(((((....)))))....)-)).)))....--..((....))....))))))).--------------------------- ( -25.60, z-score = -3.29, R) >droGri2.scaffold_15126 4508561 83 + 8399593 CUGUGUGGACAU-GG--CGUACAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGC-GAACCACAGA--UACGGAAACGAGUGCGCACGGA--------------------------- (((((((.((..-..--........(((...(((.(((((....)))))....)-)).)))....--..((....)).)).))))))).--------------------------- ( -27.00, z-score = -3.40, R) >consensus CUGUGCGGACAU_GGGGCGGAAAAAUGGAUAUCGGGGAUUGAAAAAUCCAUAGCUGAACCACAGAUACACAGAUACGAGGAUAC__AGAUACGG______________________ (((((((..(....)..))......(((.(..(..(((((....)))))...)...).)))......)))))............................................ (-10.41 = -11.14 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:13 2011