| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,772,084 – 5,772,194 |
| Length | 110 |
| Max. P | 0.807423 |
| Location | 5,772,084 – 5,772,194 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.09 |
| Shannon entropy | 0.30934 |
| G+C content | 0.54523 |
| Mean single sequence MFE | -25.02 |
| Consensus MFE | -18.86 |
| Energy contribution | -19.92 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807423 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5772084 110 + 27905053 GACUUAAUUGGGCCAAAACCCUUUGAGAGCACAGCCGCAUCAGCAUUCACUUUGUAGUUGCGGCUAAUUGCACACGCCAUGUUCUCUCUCCCCCACCCCCCCCCCACACA .........(((......)))...(((((((.(((((((.(.(((.......))).).)))))))....((....))..)))))))........................ ( -27.50, z-score = -2.96, R) >droSim1.chr3R 11923477 105 - 27517382 GACUUAAUUGGGCCAAAACCCUUUGAGAGCACAGCCGCAUCAGCAUUCACUUUGUAGUUGCGGCUAAUUGCACACGCCAUGUUCCCUCCCCGCCCCCCGCUCACU----- .........((((((((....)))).(((((.(((((((.(.(((.......))).).)))))))....((....))..))))).......))))..........----- ( -26.80, z-score = -1.70, R) >droSec1.super_0 4975310 105 - 21120651 GACUUAAUUGGGCCAAAACCCUAUGAGAGCACAGCCGCAUCAGCAUUCACUUUGUAGUUGCGGCUAAUUGCACACGCCAUGUUCCCUCACCGCCCCCCGCACACU----- .........((((((........)).(((((.(((((((.(.(((.......))).).)))))))....((....))..))))).......))))..........----- ( -24.80, z-score = -0.93, R) >droAna3.scaffold_13340 6331622 87 + 23697760 GCCUUAAUUGGGCCAA--CCCUUUGA-----UAGCCGUUUCAGCAUUCACUUUGUAGAUGCGGCUAAUUGCACACGCCACGUUCCCCGACCCGC---------------- .......(((((..((--(.......-----(((((((.((.(((.......))).)).)))))))...((....))...))).))))).....---------------- ( -21.00, z-score = -1.04, R) >consensus GACUUAAUUGGGCCAAAACCCUUUGAGAGCACAGCCGCAUCAGCAUUCACUUUGUAGUUGCGGCUAAUUGCACACGCCAUGUUCCCUCACCCCCCCCCGC_CACU_____ ..((((...(((......)))..)))).(((.(((((((.(.(((.......))).).)))))))...)))....................................... (-18.86 = -19.92 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:51 2011