| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,751,945 – 5,752,045 |
| Length | 100 |
| Max. P | 0.770368 |
| Location | 5,751,945 – 5,752,045 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 97.02 |
| Shannon entropy | 0.05735 |
| G+C content | 0.44399 |
| Mean single sequence MFE | -29.83 |
| Consensus MFE | -28.19 |
| Energy contribution | -28.05 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.696590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5751945 100 + 27905053 UUUGAAAGUCUUUGACUUGCUGCAGUUAGCUCAAACAAAAUAAAAACUGCCUCGGCCCAAGGUAAUGGGCAAUUAGCUGCAGC-AACCUUCUGGGCCAAAA- .......((((..((.((((((((((((((..................))....(((((......)))))...))))))))))-))...)).)))).....- ( -29.87, z-score = -1.36, R) >droAna3.scaffold_13340 6311593 97 + 23697760 UUUGAAAGUCUUUGACUUGCUGCAGUUAGCUC-----AAAUAAAAAUUGCCUCGGCCCAAGGUAAUGGGCAAUUAGCUGCAGCCAACCUUCUGGGCCAAGAC .......(((((.(....((((((((((....-----........(((((((..(((...)))...)))))))))))))))))...((....)).).))))) ( -29.60, z-score = -1.18, R) >droEre2.scaffold_4770 1894641 100 - 17746568 UUUGAAAGUCUUUGACUUGCUGCAGUUAGCUCAAACAAAAUAAAAACUGCCUCGGCCCAAGGUAAUGGGCAAUUAGCUGCAGC-AACCUUCUGGGCCAAAA- .......((((..((.((((((((((((((..................))....(((((......)))))...))))))))))-))...)).)))).....- ( -29.87, z-score = -1.36, R) >droYak2.chr3R 9798270 100 + 28832112 UUUGAAAGUCUUUGACUUGCUGCAGUUAGCUCAAACAAAAUAAAAACUGCCUCGGCCCAAGGUAAUGGGCAAUUAGCUGCAGC-AACCUUCUGGGCCAAAA- .......((((..((.((((((((((((((..................))....(((((......)))))...))))))))))-))...)).)))).....- ( -29.87, z-score = -1.36, R) >droSec1.super_0 4954224 100 - 21120651 UUUGAAAGUCUUUGACUUGCUGCAGUUAGCUCAAACAAAAUAAAAACUGCCUCGGCCCAAGGUAAUGGGCAAUUAGCUGCAGC-AACCUUCUGGGCCAAAA- .......((((..((.((((((((((((((..................))....(((((......)))))...))))))))))-))...)).)))).....- ( -29.87, z-score = -1.36, R) >droSim1.chr3R 11903369 100 - 27517382 UUUGAAAGUCUUUGACUUGCUGCAGUUAGCUCAAACAAAAUAAAAACUGCCUCGGCCCAAGGUAAUGGGCAAUUAGCUGCAGC-AACCUUCUGGGCCAAAA- .......((((..((.((((((((((((((..................))....(((((......)))))...))))))))))-))...)).)))).....- ( -29.87, z-score = -1.36, R) >consensus UUUGAAAGUCUUUGACUUGCUGCAGUUAGCUCAAACAAAAUAAAAACUGCCUCGGCCCAAGGUAAUGGGCAAUUAGCUGCAGC_AACCUUCUGGGCCAAAA_ ((((.(((((...)))))((((((((((((..................))....(((((......)))))...))))))))))...((....))..)))).. (-28.19 = -28.05 + -0.14)
| Location | 5,751,945 – 5,752,045 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 97.02 |
| Shannon entropy | 0.05735 |
| G+C content | 0.44399 |
| Mean single sequence MFE | -31.95 |
| Consensus MFE | -30.12 |
| Energy contribution | -30.15 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5751945 100 - 27905053 -UUUUGGCCCAGAAGGUU-GCUGCAGCUAAUUGCCCAUUACCUUGGGCCGAGGCAGUUUUUAUUUUGUUUGAGCUAACUGCAGCAAGUCAAAGACUUUCAAA -(((((((((....))((-(((((((......(((((......)))))..((((((........)))))).......))))))))))))))))......... ( -31.30, z-score = -1.31, R) >droAna3.scaffold_13340 6311593 97 - 23697760 GUCUUGGCCCAGAAGGUUGGCUGCAGCUAAUUGCCCAUUACCUUGGGCCGAGGCAAUUUUUAUUU-----GAGCUAACUGCAGCAAGUCAAAGACUUUCAAA (((((((((((..(((((((..((((....)))))))..)))))))))))))))........(((-----(((((......)))(((((...)))))))))) ( -35.20, z-score = -2.54, R) >droEre2.scaffold_4770 1894641 100 + 17746568 -UUUUGGCCCAGAAGGUU-GCUGCAGCUAAUUGCCCAUUACCUUGGGCCGAGGCAGUUUUUAUUUUGUUUGAGCUAACUGCAGCAAGUCAAAGACUUUCAAA -(((((((((....))((-(((((((......(((((......)))))..((((((........)))))).......))))))))))))))))......... ( -31.30, z-score = -1.31, R) >droYak2.chr3R 9798270 100 - 28832112 -UUUUGGCCCAGAAGGUU-GCUGCAGCUAAUUGCCCAUUACCUUGGGCCGAGGCAGUUUUUAUUUUGUUUGAGCUAACUGCAGCAAGUCAAAGACUUUCAAA -(((((((((....))((-(((((((......(((((......)))))..((((((........)))))).......))))))))))))))))......... ( -31.30, z-score = -1.31, R) >droSec1.super_0 4954224 100 + 21120651 -UUUUGGCCCAGAAGGUU-GCUGCAGCUAAUUGCCCAUUACCUUGGGCCGAGGCAGUUUUUAUUUUGUUUGAGCUAACUGCAGCAAGUCAAAGACUUUCAAA -(((((((((....))((-(((((((......(((((......)))))..((((((........)))))).......))))))))))))))))......... ( -31.30, z-score = -1.31, R) >droSim1.chr3R 11903369 100 + 27517382 -UUUUGGCCCAGAAGGUU-GCUGCAGCUAAUUGCCCAUUACCUUGGGCCGAGGCAGUUUUUAUUUUGUUUGAGCUAACUGCAGCAAGUCAAAGACUUUCAAA -(((((((((....))((-(((((((......(((((......)))))..((((((........)))))).......))))))))))))))))......... ( -31.30, z-score = -1.31, R) >consensus _UUUUGGCCCAGAAGGUU_GCUGCAGCUAAUUGCCCAUUACCUUGGGCCGAGGCAGUUUUUAUUUUGUUUGAGCUAACUGCAGCAAGUCAAAGACUUUCAAA ..(((((((((..((((.....((((....)))).....)))))))))))))((((((....((......))...)))))).(.(((((...))))).)... (-30.12 = -30.15 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:50 2011