| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,737,835 – 5,737,953 |
| Length | 118 |
| Max. P | 0.813736 |
| Location | 5,737,835 – 5,737,953 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 95.08 |
| Shannon entropy | 0.08207 |
| G+C content | 0.44915 |
| Mean single sequence MFE | -33.54 |
| Consensus MFE | -28.75 |
| Energy contribution | -30.15 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5737835 118 + 27905053 UUUGUUCUAAUGGUGAUCUUCGAUCGAUCUGAAGUUCACCUGCGGCCUGCAAUUACCUCAAUGAUCAGCGUAGCUGAUCCUAAACUCCGUUAGCUGAUUCAUAAAACGAUGUUGGCCA ...........(((((.(((((.......))))).)))))...((((.(((.........(((((((((.((((.((........)).))))))))).)))).......))).)))). ( -33.99, z-score = -2.75, R) >droYak2.chr3R 9783430 118 + 28832112 UUUGUUCUAAUAGUGAUCUUCGGGUGAUCUUCAGUUCACCUGCGGCCUGCAAUUACCUCGAUGAUCAGCGUAGCUGAUCCUAAACUCCGUUAGCUGAUUCAUGAAACGAUGUUGGCCA ....................(((((((........))))))).((((.(((......((.(((((((((.((((.((........)).))))))))).)))))).....))).)))). ( -33.50, z-score = -1.67, R) >droEre2.scaffold_4770 1880433 118 - 17746568 UUUGUUCUAAUAGUGAUCUUCGGGUGAUCUUCAGUUCACCUGCGGCCUGCAAUUACCGCGAUGAUCAGCGUAGCUGAUCCUAAACUCCGUUAGCUGAUUCAUGAAACGAUGUUGGCCA ....................(((((((........))))))).((((.(((.......(.(((((((((.((((.((........)).))))))))).)))))......))).)))). ( -32.72, z-score = -1.14, R) >droSec1.super_0 4940429 118 - 21120651 UUUGUUCUAAUGGUGAUCUUCGAUCGAUCUGAAGUUCACCUGCGGCCUGCAAUUACUUCGAUGAUCAGCGUAGAUGAUCCUAAACUCCGUUAGCUGAUUCAUAAAACGAUGUUGGCCA ...........(((((.(((((.......))))).)))))...((((.(((.........(((((((((...((((...........)))).))))).)))).......))).)))). ( -32.39, z-score = -1.89, R) >droSim1.chr3R 11889061 118 - 27517382 UUUGUUCUAAUGGUGAUCUUCGAUCGAUCUGAAGUUCACCUGCGGCCUGCAAUUACCUCGAUGAUCAGCGUAGCUGAUCCUAAACUCCGUUAGCUGAUUCAUAAAACGAUGUUGGCCA ...........(((((.(((((.......))))).)))))...((((.(((.........(((((((((.((((.((........)).))))))))).)))).......))).)))). ( -35.09, z-score = -2.76, R) >consensus UUUGUUCUAAUGGUGAUCUUCGAUCGAUCUGAAGUUCACCUGCGGCCUGCAAUUACCUCGAUGAUCAGCGUAGCUGAUCCUAAACUCCGUUAGCUGAUUCAUAAAACGAUGUUGGCCA ...........(((((.(((((.......))))).)))))...((((.(((.........(((((((((.((((.((........)).))))))))).)))).......))).)))). (-28.75 = -30.15 + 1.40)
| Location | 5,737,835 – 5,737,953 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 95.08 |
| Shannon entropy | 0.08207 |
| G+C content | 0.44915 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -28.78 |
| Energy contribution | -29.54 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5737835 118 - 27905053 UGGCCAACAUCGUUUUAUGAAUCAGCUAACGGAGUUUAGGAUCAGCUACGCUGAUCAUUGAGGUAAUUGCAGGCCGCAGGUGAACUUCAGAUCGAUCGAAGAUCACCAUUAGAACAAA .(((((((..((((...((...))...))))..)))...(((((((...)))))))...............))))...(((((.((((.((....)))))).)))))........... ( -34.20, z-score = -2.28, R) >droYak2.chr3R 9783430 118 - 28832112 UGGCCAACAUCGUUUCAUGAAUCAGCUAACGGAGUUUAGGAUCAGCUACGCUGAUCAUCGAGGUAAUUGCAGGCCGCAGGUGAACUGAAGAUCACCCGAAGAUCACUAUUAGAACAAA .(((((((..((((...((...))...))))..)))...(((((((...)))))))...............))))...(((((.(....).)))))...................... ( -28.30, z-score = -0.30, R) >droEre2.scaffold_4770 1880433 118 + 17746568 UGGCCAACAUCGUUUCAUGAAUCAGCUAACGGAGUUUAGGAUCAGCUACGCUGAUCAUCGCGGUAAUUGCAGGCCGCAGGUGAACUGAAGAUCACCCGAAGAUCACUAUUAGAACAAA ((..((((..((((...((...))...))))..)))((((((((((...)))))))((((((((........))))).(((((.(....).)))))....)))..)))...)..)).. ( -30.00, z-score = -0.64, R) >droSec1.super_0 4940429 118 + 21120651 UGGCCAACAUCGUUUUAUGAAUCAGCUAACGGAGUUUAGGAUCAUCUACGCUGAUCAUCGAAGUAAUUGCAGGCCGCAGGUGAACUUCAGAUCGAUCGAAGAUCACCAUUAGAACAAA .((((..(((..((((((((.(((((((...((........))...)).))))))))).))))..).))..))))...(((((.((((.((....)))))).)))))........... ( -30.80, z-score = -1.53, R) >droSim1.chr3R 11889061 118 + 27517382 UGGCCAACAUCGUUUUAUGAAUCAGCUAACGGAGUUUAGGAUCAGCUACGCUGAUCAUCGAGGUAAUUGCAGGCCGCAGGUGAACUUCAGAUCGAUCGAAGAUCACCAUUAGAACAAA .(((((((..((((...((...))...))))..)))...(((((((...)))))))...............))))...(((((.((((.((....)))))).)))))........... ( -34.20, z-score = -2.20, R) >consensus UGGCCAACAUCGUUUUAUGAAUCAGCUAACGGAGUUUAGGAUCAGCUACGCUGAUCAUCGAGGUAAUUGCAGGCCGCAGGUGAACUUCAGAUCGAUCGAAGAUCACCAUUAGAACAAA .(((((((..((((...((...))...))))..)))...(((((((...)))))))...............))))...(((((.((((.........)))).)))))........... (-28.78 = -29.54 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:48 2011