| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,737,112 – 5,737,207 |
| Length | 95 |
| Max. P | 0.905989 |
| Location | 5,737,112 – 5,737,207 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 78.00 |
| Shannon entropy | 0.41190 |
| G+C content | 0.42348 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -9.02 |
| Energy contribution | -10.98 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.91 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5737112 95 - 27905053 AAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUUGGUGGC------AGGGGUAGGGACAAGUGGAAACA-AAAGCGAAUCAAGUUAAUUGCCGUUA ...(((((((((....).((........(((.((((((....))))------))..)))........((....))-...))............)))))))). ( -26.00, z-score = -3.22, R) >droSim1.chr3R 11888338 95 + 27517382 AAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUCGGUGGC------AGGGGUAGGGACAAGUGGAAACA-AAAGCGAAUCAAGUUAAUUGCCGUUA ...(((((((((....).((........(((.((((((....))))------))..)))........((....))-...))............)))))))). ( -26.00, z-score = -3.18, R) >droSec1.super_0 4939708 95 + 21120651 AAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUUCGUGGC------AGGGGUAGGGACAAGUGGAAACA-AAAGCGAAUCAAGUUAAUUGCCGUUA ...(((((((((....).((........(((.((((((....))))------))..)))........((....))-...))............)))))))). ( -26.00, z-score = -3.09, R) >droEre2.scaffold_4770 1879723 95 + 17746568 AAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUUGGCGGC------AGGGGGAGGGAUAAAUGGAAACA-AAAGCGAAUCAAGUUAAUUGCCGUUA ...(((((((((....).(((.......))).))))))))((((((------((..((...(((...((....))-.......)))...))..)))))))). ( -28.00, z-score = -4.30, R) >droYak2.chr3R 9782679 101 - 28832112 AAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUUGCUGGCUGGUGGAGGGGAAGGGACAAAUGGAAACA-AAAGCGAAUCAAGUUAAUUGCCGUUA ...(((((((((....).((........(.((((((((....)))).)))).)..............((....))-...))............)))))))). ( -23.40, z-score = -1.12, R) >droWil1.scaffold_181130 321781 76 + 16660200 ----------------------AAAAAAGAAAAUAGGAGUGGUGAA----AAAAAGCAUUGGCCAGAUCUGGACACAAUGCGAGUCAAGUUAAUUGCUGUUA ----------------------.........(((((.(((..(((.----.....((((((.(((....)))...))))))...))).....))).))))). ( -18.20, z-score = -2.57, R) >consensus AAAAAUGGCAAGGAGACAGCAAGAAAAAUGCAUUGCCAUUGGUGGC______AGGGGUAGGGACAAAUGGAAACA_AAAGCGAAUCAAGUUAAUUGCCGUUA ...(((((((((....).(((.......))).))))))))....................((.(((.((....))...(((.......)))..))))).... ( -9.02 = -10.98 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:47 2011