| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,733,386 – 5,733,524 |
| Length | 138 |
| Max. P | 0.995983 |
| Location | 5,733,386 – 5,733,524 |
|---|---|
| Length | 138 |
| Sequences | 4 |
| Columns | 139 |
| Reading direction | forward |
| Mean pairwise identity | 75.69 |
| Shannon entropy | 0.39607 |
| G+C content | 0.39785 |
| Mean single sequence MFE | -34.64 |
| Consensus MFE | -22.00 |
| Energy contribution | -22.88 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.87 |
| SVM RNA-class probability | 0.995983 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5733386 138 + 27905053 UUCAACAUUCAACAUCUCAUUCCGUUCCAUCCAAACAGUCCGCCU-UUUGAGCAGUGUAUAUUACACUGUUUAUCAGGCCAUGUUCAGUCAUGAAGUUUUGAUUAUGGCAUUUUAAUCAGACGGAAGAAAAGCUCGUGG .....(((........((.(((((((......((((.....((((-..(((((((((((...)))))))))))..))))((((......))))..))))((((((........))))))))))))))).......))). ( -36.16, z-score = -3.30, R) >droSim1.chr3R 11884618 137 - 27517382 UUCAACAU-CAACAUCUCAUUCCAUCCCGUCCAAAUCGUCCGCCU-UUUGAGCAGUGUAUAUUACACUGUUUAUCAGGCCAUAUUCAGUCAUGAAGUUUUGAUUAUGACAUUUUAAUCAGACGGAAGAAAAGCUCGUGG ........-............((((.(((((..........((((-..(((((((((((...)))))))))))..))))........(((((((........)))))))..........)))))..((.....)))))) ( -35.60, z-score = -3.86, R) >droSec1.super_0 4935962 138 - 21120651 UUCAACAUUCAACAUCUCAUUCCAUCCCAUCCAAAUCGUCUGCCU-UUUGAGCAGUGUAUAUUACACUGUUUAUCAGGCCAUAUUCAGUCAUGAAGUUUUGAUUAUGGCAUUUUAAUCAGACGGAAGAAAAGCUCGUGG ..........................((((.....(((((((.((-..(((((((((((...)))))))))))..))((((((.((((..........)))).))))))........)))))))..((.....)))))) ( -35.40, z-score = -3.40, R) >droAna3.scaffold_13340 6294357 123 + 23697760 AGCAACUGGCAACAUUGAUGGACAGGCCG--AGAGCUGUCCGCCCACCUGGGCAGAGUGUAAUGCAAUAUUAAUUAAGCCUUAUACUGCUAUGAAGUUUUGAUUAUAUCAUUUAAUUCAGAGAGA-------------- ..(((.((....)))))..((((((....--....))))))((((....))))..(((((((.((............)).))))))).((.((((....((((...)))).....)))).))...-------------- ( -31.40, z-score = -0.95, R) >consensus UUCAACAUUCAACAUCUCAUUCCAUCCCAUCCAAACCGUCCGCCU_UUUGAGCAGUGUAUAUUACACUGUUUAUCAGGCCAUAUUCAGUCAUGAAGUUUUGAUUAUGGCAUUUUAAUCAGACGGAAGAAAAGCUCGUGG ...................................(((((.((((...((((((((((.....))))))))))..))))........(((((((........)))))))..........)))))............... (-22.00 = -22.88 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:45 2011