| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,712,161 – 5,712,274 |
| Length | 113 |
| Max. P | 0.587806 |
| Location | 5,712,161 – 5,712,274 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 67.12 |
| Shannon entropy | 0.54666 |
| G+C content | 0.33800 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -9.23 |
| Energy contribution | -10.48 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5712161 113 + 27905053 AAAUGUUUGCUCAGGUAUAGUGUUAUUUCAUUAAUUUAAUCUAUUUAUCUAAUAAUUUGGAUAACAACUUUGGCAGCCAGACAAGUGGAGGAAUUCUAGUCCUCCCCGCCGAU ...((.(((((.((((.(((((......)))))...........((((((((....))))))))..)))).))))).)).....(.((((((.......)))))).)...... ( -25.70, z-score = -1.42, R) >droSim1.chr3R 11863448 89 - 27517382 ----------------------AAAUGUUUGCCAUUUAUUAUAUUUAUCUAAUAAUUUAGAUAACAAAUUUGGCAGCCAGACAAGUGGAGGAAUUCUAGUCCUCC--ACCGAU ----------------------...((.((((((...(((....((((((((....))))))))..))).)))))).)).....((((((((.......))))))--)).... ( -26.70, z-score = -4.95, R) >droYak2.chr3R 9756140 104 + 28832112 ----AAGUGCUUCAUGGAAAUUUUCUUUUAUAAAUUUAAUCUAUUUAUCCAAUUUUUAUGUUAAUAAAUUUGGGAACCAGACAAGUGGAGGAAUCCUAGCCUUCC--CCU--- ----....((((..(((((((((........))))))..........(((((..(((((....))))).)))))..)))...))))((.((((........))))--)).--- ( -17.20, z-score = 0.39, R) >droEre2.scaffold_4770 1853151 107 - 17746568 ----AAACGUUUGCUGGGAAUUUUCUUUUAUCAUUUUAAUCUAUUUAUCAAAUUUUCUUGUGAACAAAUUUGGGAGCCAGACAAGUGGAGGAGUCCUAGUCCUCC--ACCGAU ----...((.((((((((((......)))..................((((((((((....))..))))))))...)))).)))((((((((.......))))))--)))).. ( -23.30, z-score = -0.46, R) >consensus ____AA_UGCUU__UGG_AAUUUUAUUUUAUCAAUUUAAUCUAUUUAUCUAAUAAUUUUGAUAACAAAUUUGGCAGCCAGACAAGUGGAGGAAUCCUAGUCCUCC__ACCGAU ............................................((((((((....))))))))....(((((...))))).....((((((.......))))))........ ( -9.23 = -10.48 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:41 2011