| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,707,627 – 5,707,725 |
| Length | 98 |
| Max. P | 0.990740 |
| Location | 5,707,627 – 5,707,725 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 75.12 |
| Shannon entropy | 0.51168 |
| G+C content | 0.42050 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -16.30 |
| Energy contribution | -16.07 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.985246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5707627 98 + 27905053 AAGCCACGCAUGAAAAUUGCUUUUCAUGUGGCACAGCGCAAAGCCGAAAA-AUGUAUA-AAAUAAAAUAAGAUGUC------AACGUCACCAGU-UUGCGCCGAACA ..(((..(((((((((....)))))))))))).(.(((((((((......-..))...-...........((((..------..)))).....)-)))))).).... ( -24.70, z-score = -1.84, R) >droSim1.chr3R 11858920 98 - 27517382 AAGCCACGCAUGAAAAUUGCUUUUCAUGUGGCACAGCGCAAAGCCGAAAA-AUGUAUA-AAAUGAAAUAAGAUGUC------AACGUCACCAGU-UUGUGCCGAACA .......(((((((((....)))))))))((((((((.....))......-.......-...........((((..------..))))......-.))))))..... ( -23.20, z-score = -1.08, R) >droSec1.super_0 4910874 98 - 21120651 AAGCCACGCAUGAAAAUUGCUUUUCAUGUGGCACAGCGCAAAUUUCGGCU-UUGUAUA-AAAUAAAAUAAGAUGUC------AACGUCACCAGU-UUGCGCCGAACA ..(((..(((((((((....)))))))))))).(.(((((((((..((.(-((((...-..)))))....((((..------..)))).)))))-)))))).).... ( -28.40, z-score = -2.39, R) >droYak2.chr3R 9751309 96 + 28832112 AAGCCACGCAUGAAAAUUGCUUUUCAUGUGGCACAGC--AAAGCCGAAAA-AUGUAUA-AAAUAAAAUAAGAUGUC------AACGUCACCGGU-UUGCGCCGAGCA ..(((..(((((((((....)))))))))(((...((--(((.(((....-.(((...-..)))......((((..------..))))..))))-)))))))).)). ( -25.00, z-score = -1.58, R) >droEre2.scaffold_4770 1848347 96 - 17746568 AAGCCACGCAUGAAAAUUGCUUUUCAUGUGGCACAGC--AAAGCCGAAAA-AUGUAUA-AAAUAAAAUAAGAUGUC------AACGUCACCAGU-UUGCGCCGAGCA ..(((..(((((((((....))))))))))))...((--...((((((..-.(((((.-.......))).((((..------..))))..)).)-))).))...)). ( -20.40, z-score = -0.44, R) >droAna3.scaffold_13340 6267009 91 + 23697760 AAGCCACGCAUGAAAAUUGCUUUUCAUGUGGCAGAG-----AACCGAAAA-GUGGAUA-AAAUAAAAGAAGACGUC------AACGUCACCAGC-UCACGUUGCC-- ..(((..(((((((((....)))))))))))).(((-----..(((....-.)))...-...........((((..------..)))).....)-))........-- ( -22.20, z-score = -1.72, R) >dp4.chr2 25526177 96 - 30794189 AAGCCACGCAUGAAAAUUGCUUUUCAUGUGGC---------AGCCGAAAA-ACGGAUAGAAAUAAAGGAAGACGUCAACGACAACGUCACCAGU-UCUGCCCAUAGA ..(((..(((((((((....))))))))))))---------.........-..((.(((((.....((..(((((........))))).))..)-)))).))..... ( -25.00, z-score = -2.26, R) >droPer1.super_19 891771 96 - 1869541 AAGCCACGCAUGAAAAUUGCUUUUCAUGUGGC---------AGCCGAAAA-ACGGAUAGAAAUAAAGGAAGACGUCAACGACAACGUCACCAGU-UCUGCCCAUAGA ..(((..(((((((((....))))))))))))---------.........-..((.(((((.....((..(((((........))))).))..)-)))).))..... ( -25.00, z-score = -2.26, R) >droWil1.scaffold_181130 282878 90 - 16660200 AAGCCACGCAUGAAAAUUGCUUUUCAUGUGGC---------AACUGAAAAUAUGGAUA-ACAUGAAAGAAGACGUC------AACGUUACCAGU-UUAUAUCAUUCA ..(((..(((((((((....))))))))))))---------(((((....((((....-.))))......((((..------..))))..))))-)........... ( -21.20, z-score = -2.24, R) >droVir3.scaffold_13047 8387680 82 - 19223366 AAGCCACGCAUGAAAAUUGCUUUUCAUGCGGC-UGGCAGAGCAGCGAAAA-GUGUAUA-GAA-AAGAGAAGACAUC------AACGUCAGCA--------------- ..((((((((((((((....))))))))))..-))))...((.((.....-)).....-...-.......(((...------...))).)).--------------- ( -23.10, z-score = -1.72, R) >droMoj3.scaffold_6540 30956479 78 + 34148556 AAGCCACGCAUGAAAAUUGCUUUUCAUGUGGC---------------AAA-AUGGUUA-GAA-AAGAGAAGACAUC------AACGUCAGCAAAGUCGCGGC----- ..(((.((((((((((....))))))))))..---------------...-.......-...-.......(((...------...))).((......)))))----- ( -18.70, z-score = -1.08, R) >consensus AAGCCACGCAUGAAAAUUGCUUUUCAUGUGGCACAGC__A_AGCCGAAAA_AUGUAUA_AAAUAAAAGAAGACGUC______AACGUCACCAGU_UUGCGCCGAACA ..(((..(((((((((....))))))))))))......................................(((((........)))))................... (-16.30 = -16.07 + -0.23)
| Location | 5,707,627 – 5,707,725 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 75.12 |
| Shannon entropy | 0.51168 |
| G+C content | 0.42050 |
| Mean single sequence MFE | -26.01 |
| Consensus MFE | -14.83 |
| Energy contribution | -14.66 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.44 |
| SVM RNA-class probability | 0.990740 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5707627 98 - 27905053 UGUUCGGCGCAA-ACUGGUGACGUU------GACAUCUUAUUUUAUUU-UAUACAU-UUUUCGGCUUUGCGCUGUGCCACAUGAAAAGCAAUUUUCAUGCGUGGCUU ....((((((((-(..(....)(((------((.....(((.......-.)))...-...)))))))))))))).((((((((((((....)))))))..))))).. ( -29.90, z-score = -2.69, R) >droSim1.chr3R 11858920 98 + 27517382 UGUUCGGCACAA-ACUGGUGACGUU------GACAUCUUAUUUCAUUU-UAUACAU-UUUUCGGCUUUGCGCUGUGCCACAUGAAAAGCAAUUUUCAUGCGUGGCUU ....((((.(((-(..(....)(((------((.....(((.......-.)))...-...))))))))).)))).((((((((((((....)))))))..))))).. ( -24.50, z-score = -1.16, R) >droSec1.super_0 4910874 98 + 21120651 UGUUCGGCGCAA-ACUGGUGACGUU------GACAUCUUAUUUUAUUU-UAUACAA-AGCCGAAAUUUGCGCUGUGCCACAUGAAAAGCAAUUUUCAUGCGUGGCUU ....((((((((-(.((((....((------(................-....)))-.))))...))))))))).((((((((((((....)))))))..))))).. ( -28.95, z-score = -2.01, R) >droYak2.chr3R 9751309 96 - 28832112 UGCUCGGCGCAA-ACCGGUGACGUU------GACAUCUUAUUUUAUUU-UAUACAU-UUUUCGGCUUU--GCUGUGCCACAUGAAAAGCAAUUUUCAUGCGUGGCUU .(((.((((((.-...(....)(((------((.....(((.......-.)))...-...)))))...--..)))))).((((((((....))))))))...))).. ( -23.90, z-score = -0.90, R) >droEre2.scaffold_4770 1848347 96 + 17746568 UGCUCGGCGCAA-ACUGGUGACGUU------GACAUCUUAUUUUAUUU-UAUACAU-UUUUCGGCUUU--GCUGUGCCACAUGAAAAGCAAUUUUCAUGCGUGGCUU .(((.((((((.-...(....)(((------((.....(((.......-.)))...-...)))))...--..)))))).((((((((....))))))))...))).. ( -23.60, z-score = -0.94, R) >droAna3.scaffold_13340 6267009 91 - 23697760 --GGCAACGUGA-GCUGGUGACGUU------GACGUCUUCUUUUAUUU-UAUCCAC-UUUUCGGUU-----CUCUGCCACAUGAAAAGCAAUUUUCAUGCGUGGCUU --((..((((.(-((.(....))))------.))))..))........-...((((-.....(((.-----....))).((((((((....)))))))).))))... ( -25.70, z-score = -2.23, R) >dp4.chr2 25526177 96 + 30794189 UCUAUGGGCAGA-ACUGGUGACGUUGUCGUUGACGUCUUCCUUUAUUUCUAUCCGU-UUUUCGGCU---------GCCACAUGAAAAGCAAUUUUCAUGCGUGGCUU .((((((((((.-...((.((((((......))))))..))...........(((.-....)))))---------))).((((((((....)))))))))))))... ( -32.10, z-score = -3.53, R) >droPer1.super_19 891771 96 + 1869541 UCUAUGGGCAGA-ACUGGUGACGUUGUCGUUGACGUCUUCCUUUAUUUCUAUCCGU-UUUUCGGCU---------GCCACAUGAAAAGCAAUUUUCAUGCGUGGCUU .((((((((((.-...((.((((((......))))))..))...........(((.-....)))))---------))).((((((((....)))))))))))))... ( -32.10, z-score = -3.53, R) >droWil1.scaffold_181130 282878 90 + 16660200 UGAAUGAUAUAA-ACUGGUAACGUU------GACGUCUUCUUUCAUGU-UAUCCAUAUUUUCAGUU---------GCCACAUGAAAAGCAAUUUUCAUGCGUGGCUU ((((.(((((..-...((((((((.------((.........))))))-)))).)))))))))...---------((((((((((((....)))))))..))))).. ( -21.40, z-score = -2.00, R) >droVir3.scaffold_13047 8387680 82 + 19223366 ---------------UGCUGACGUU------GAUGUCUUCUCUU-UUC-UAUACAC-UUUUCGCUGCUCUGCCA-GCCGCAUGAAAAGCAAUUUUCAUGCGUGGCUU ---------------.((.((((..------..)))).......-...-....(((-.....((((......))-)).(((((((((....)))))))))))))).. ( -22.90, z-score = -2.40, R) >droMoj3.scaffold_6540 30956479 78 - 34148556 -----GCCGCGACUUUGCUGACGUU------GAUGUCUUCUCUU-UUC-UAACCAU-UUU---------------GCCACAUGAAAAGCAAUUUUCAUGCGUGGCUU -----((((((........((((..------..)))).......-...-.......-...---------------....((((((((....)))))))))))))).. ( -21.10, z-score = -2.81, R) >consensus UGUUCGGCGCAA_ACUGGUGACGUU______GACGUCUUCUUUUAUUU_UAUACAU_UUUUCGGCU_U__GCUGUGCCACAUGAAAAGCAAUUUUCAUGCGUGGCUU ...............((....))....................................................((((((((((((....)))))))..))))).. (-14.83 = -14.66 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:41 2011