| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,706,400 – 5,706,490 |
| Length | 90 |
| Max. P | 0.676532 |
| Location | 5,706,400 – 5,706,490 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 77.58 |
| Shannon entropy | 0.38750 |
| G+C content | 0.44629 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -12.21 |
| Energy contribution | -11.85 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.676532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5706400 90 - 27905053 AGUCGAAAAAUCAGGUGUUCA-CGUGUAUGGGUUGGUUUUUGUGUCUGUGUGCAUAUCUGGUUGAGCUUGUGCUAAAAGGCCGCUUGAAAA ..........((((((((.((-((..(((..(......)..)))..)))).))......((((.(((....)))....))))))))))... ( -21.10, z-score = -0.77, R) >droSec1.super_0 4909680 86 + 21120651 AGUCGAAAAAUCAGGUGUUCA-CGUGUAUGGG----UUUUAGUGUCUGUGUGCAUAUCUGGUUGAGCUUGUGCUGAAAGGCCGCUUGAAAA ........((((((((((...-.(..((((((----........))))))..)))))))))))((((..(.(((....))))))))..... ( -20.30, z-score = -0.57, R) >droYak2.chr3R 9750032 88 - 28832112 AGUCGAAAAAUCAGGUGUUCA-CGUGUAUAGGUU--UGUUUGUGUCUGUGUGAAUAUCUGGUUGUGCUUGUGCUGAAAGGCCGCUUGAAAA ..((((..(((((((((((((-(..(.(((.(..--....).))).)..))))))))))))))......(((((....)).)))))))... ( -24.30, z-score = -3.12, R) >droEre2.scaffold_4770 1847105 88 + 17746568 AUUCGAAAAAUCAGGUGUUCG-UGUGUAUAGGUU--UCUUUGUGUCUGUGUGAAUAUCUGGUUGAGCUUGUGCUGAAAGGCCGCUUGAAAA .(((....(((((((((((((-..(..(((.(..--....).)))..)..)))))))))))))((((..(.(((....))))))))))).. ( -24.80, z-score = -3.75, R) >dp4.chr2 25524504 74 + 30794189 -----CAAAAUCAGGUGUGCACCAUGUCCAG--------CUGUGUGUGUGUGAGUAUCUGGUUG----UAAGCCGAAAUGCCGCUUGAAAC -----...(((((((((..(((((((..(..--------..)..)))).)))..))))))))).----(((((.(.....).))))).... ( -19.20, z-score = -1.17, R) >droPer1.super_19 890083 74 + 1869541 -----CAUAAUCAGGUGUGCACCAUGUCCAG--------CUGUGUGUGUGUGAGUAUCUGGUUG----UAAGCCGAAAUGCCGCUUGAAAC -----.(((((((((((..(((((((..(..--------..)..)))).)))..))))))))))----)((((.(.....).))))..... ( -20.50, z-score = -1.33, R) >consensus AGUCGAAAAAUCAGGUGUUCA_CGUGUAUAGG____U_UUUGUGUCUGUGUGAAUAUCUGGUUGAGCUUGUGCUGAAAGGCCGCUUGAAAA ........((((((((((.((.((..((((((......))))))..))))...))))))))))........(((....))).......... (-12.21 = -11.85 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:39 2011