| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,680,980 – 5,681,070 |
| Length | 90 |
| Max. P | 0.736928 |
| Location | 5,680,980 – 5,681,070 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 71.19 |
| Shannon entropy | 0.50537 |
| G+C content | 0.39337 |
| Mean single sequence MFE | -19.57 |
| Consensus MFE | -10.89 |
| Energy contribution | -11.58 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5680980 90 - 27905053 -UUCUUUGCAUACAAACGC-CACACACUUU-GCAUGUGGAAACGCAUGGGAAAUCGAUUGACUGCAUAUGUGGUUAAUACCGGAAAACAUCCA--------------- -......((........))-.......(((-.((((((....)))))).)))....((((((..(....)..))))))...(((.....))).--------------- ( -22.80, z-score = -1.70, R) >droAna3.scaffold_13340 6231105 107 - 23697760 -UAUCUCCGAUACAAAAAUACCCACACUUUCUCCUGCCGUAACUCAUGUGAAAUCGAUUUACUGGUCAUAGGGUUCAUACACGAGUAUCCCUUGACUGUGGCCAGAAU -...........................((((...(((((((.((((.....)).)).)))).(((((.((((...((((....)))))))))))))..))).)))). ( -19.70, z-score = 0.15, R) >droEre2.scaffold_4770 1809529 91 + 17746568 UUUAUUUUUAUACAAACGC-CACACAAUUU-GCAUGUGGAAACACAUGGGAAACCGAUUGACUGCAUACGAAGUUAAUGCCGGAAAACAUCCA--------------- ...................-.......(((-.((((((....)))))).))).((((((((((........)))))))..)))..........--------------- ( -21.60, z-score = -2.74, R) >droYak2.chr3R 9716595 91 - 28832112 UUAGUUUUUAUGCAAACGC-CACACAACUU-GCAUGUGGAAGCAUAUGGGAAAUCGAUUGACUGAAUACGAAGUUAAUACCGGAAAACAUCCA--------------- ...((((((((((.....(-((((......-...)))))..)))).(((.......(((((((........))))))).))))))))).....--------------- ( -17.80, z-score = -0.97, R) >droSec1.super_0 4884782 90 + 21120651 -UUUUUUGCCUACAAACGC-CACACAAUUU-GCAUGUGGGAACACAUGGGAAAUCGAUUGACUGAAUAUGUAGUUAAUACCGGAAAACAUCCA--------------- -..................-.......(((-.((((((....)))))).)))....((((((((......))))))))...(((.....))).--------------- ( -19.20, z-score = -1.07, R) >droSim1.chr3R 11840758 80 + 27517382 ----UUUUU-------UGC-CACACAAUUU-GCAUGUGAAAACACAUGGGAAAUCCAUUGACUGAAUAUGUAGUUAAUACCGGAAAACAUCCA--------------- ----.....-------...-.......(((-.((((((....)))))).)))....((((((((......))))))))...(((.....))).--------------- ( -16.30, z-score = -1.20, R) >consensus _UUUUUUUUAUACAAACGC_CACACAAUUU_GCAUGUGGAAACACAUGGGAAAUCGAUUGACUGAAUAUGUAGUUAAUACCGGAAAACAUCCA_______________ ................................((((((....))))))........(((((((........)))))))...(((.....)))................ (-10.89 = -11.58 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:34 2011