| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,678,911 – 5,679,002 |
| Length | 91 |
| Max. P | 0.535172 |
| Location | 5,678,911 – 5,679,002 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 67.24 |
| Shannon entropy | 0.58297 |
| G+C content | 0.45862 |
| Mean single sequence MFE | -24.92 |
| Consensus MFE | -11.23 |
| Energy contribution | -13.81 |
| Covariance contribution | 2.58 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5678911 91 + 27905053 CAUGGCUUGUCAUGGGAUAUGUGUAUAUACGAGUAUAU----------GGCUAUAUGCAUGUGCUGCCGGCAGGGAAAUUGAGUUCAAGUGAACUCAGUCA---- .....((((((.(((.(((((((((((..((......)----------)..))))))))))).)))..))))))...(((((((((....)))))))))..---- ( -28.70, z-score = -1.56, R) >droSim1.chr3R 11838346 87 - 27517382 CACGGCUUGUCAUGGGAUAUGAGUAUAUAUAUAU--------------GGCUAUAUGCAUGUGCUGCGGGCAGGGAAAUCGAGUUCAAGUGAACUCAGUCA---- .....((((((..((.(((((.(((((.......--------------...))))).))))).))...))))))......((((((....)))))).....---- ( -23.10, z-score = -0.55, R) >droSec1.super_0 4882721 87 - 21120651 CACGGCUUGUCAUGGGAUAUGGGUAUAUAUAUAU--------------GGCUAAAUGCAUGUGCUGCGGGCAGGGAAAUCGAGUUCAAGUGAACUCAGUCA---- ((((((..((((((..(((((....))))).)))--------------))).....)).))))(((....))).......((((((....)))))).....---- ( -22.30, z-score = -0.61, R) >droYak2.chr3R 9714478 97 + 28832112 CACGGCUUGUCAUGGGAUAUAAGUACGUAUAUAUAUGCGACUAUAU--GGCUAUAUGCAUGUGCUGUGGGCAGGGAAAUCGAGUUCAUGUGAACUCUCC------ ((((((.((.((((...(((((((.(((((....)))))))).)))--)....))))))...)))))).....(((....((((((....)))))))))------ ( -27.60, z-score = -0.95, R) >droEre2.scaffold_4770 1807383 98 - 17746568 CUCGGCUUUUCAUGG-AUAUAAGUACGUAUAUAUAAACGAGUAUAUAUGGCUGUAUGCAUGUAGUGCGGGCAGGGAAAUCGAGUUCAAGUGAACUCUCU------ (((((((...((((.-(((((.((.(((((((((......)))))))))))))))).)))).))).))))..........((((((....))))))...------ ( -29.40, z-score = -2.70, R) >droPer1.super_0 8055941 76 + 11822988 ----CCUCUCUACAGGCCCUGGCCAAACACU-----------------GGCC-----CAUGCGAUGC---CAACGAAAUUGAGUUCAAGUGAACUGCCAGCCACA ----..........(((....))).....((-----------------(((.-----....((((..---.......))))(((((....))))))))))..... ( -18.40, z-score = -0.40, R) >consensus CACGGCUUGUCAUGGGAUAUGAGUAUAUAUAUAU______________GGCUAUAUGCAUGUGCUGCGGGCAGGGAAAUCGAGUUCAAGUGAACUCACUCA____ .....((((((..((.(((((.(((((........................))))).))))).))...))))))......((((((....))))))......... (-11.23 = -13.81 + 2.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:34 2011