| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,678,322 – 5,678,386 |
| Length | 64 |
| Max. P | 0.579440 |
| Location | 5,678,322 – 5,678,386 |
|---|---|
| Length | 64 |
| Sequences | 7 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 62.41 |
| Shannon entropy | 0.68277 |
| G+C content | 0.46705 |
| Mean single sequence MFE | -19.91 |
| Consensus MFE | -6.17 |
| Energy contribution | -4.83 |
| Covariance contribution | -1.34 |
| Combinations/Pair | 1.82 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5678322 64 + 27905053 UUCCUGCAGGUGGCUACUUAGGGAGUUUCCGUGAAUUCACGGGAAAAACUGCAGUGGCCAAGUU------ ..((....))(((((((((((....((((((((....))))))))...))).))))))))....------ ( -26.40, z-score = -3.43, R) >droPer1.super_0 8055142 68 + 11822988 GUAUUGUUAGAGAGUUCU--GGGGUUUUAAUUUCAUUCCGACUAAUUAUAGCGUUGCAGAAAAGACCAGA (((.(((((...((((..--(((((.........))))))))).....))))).)))............. ( -9.50, z-score = 0.72, R) >dp4.chr2 18375216 68 - 30794189 GUAUUGUUAGAGAGUUCU--GAGGUUUUAAUUUCAUUCCGACUAAUUAUAGCGUUGCAGAAAAGACCAGA (((.(((((...((((.(--(((((....))))))....)))).....))))).)))............. ( -9.40, z-score = 0.28, R) >droEre2.scaffold_4770 1806810 55 - 17746568 UUCCUGCAGGUGGCUACUUAGGGAGUUUUCCUGAAUGCA-GGGAAAACCUGCAGUG-------------- ...((((((((.(((.(....).)))(((((((....))-))))).))))))))..-------------- ( -21.20, z-score = -2.25, R) >droYak2.chr3R 9713784 63 + 28832112 UUCCUGCAGGUGGCUACUUAGGGAGUUUUCCCGAAUGCA-GGGCAAAAUUGCAGUGGCCAAGGU------ .....((...(((((((...(((......)))...((((-(.......))))))))))))..))------ ( -21.30, z-score = -0.85, R) >droSec1.super_0 4882114 63 - 21120651 UUCCUGCAGGUGGCUACUUAGGGAGUUUCCCUGAAUGCA-GAUGAAAACUGCAGUGGCCAAGGU------ .....((...(((((((((((((.....)))))).((((-(.(....)))))))))))))..))------ ( -26.20, z-score = -2.92, R) >droSim1.chr3R 11837736 63 - 27517382 UUCCUGCAGGUGGCUACUUAGGGAGUUUCCCUGAAUGCA-GCUGAAAACUGCAGUGGCCAAGUU------ ..((....))(((((((((((((.....)))))).((((-(.(....)))))))))))))....------ ( -25.40, z-score = -2.40, R) >consensus UUCCUGCAGGUGGCUACUUAGGGAGUUUCCCUGAAUGCA_GCUAAAAACUGCAGUGGCCAAGAU______ ...((((((((....))...(((......)))................))))))................ ( -6.17 = -4.83 + -1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:33 2011