| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,664,119 – 5,664,196 |
| Length | 77 |
| Max. P | 0.799620 |
| Location | 5,664,119 – 5,664,196 |
|---|---|
| Length | 77 |
| Sequences | 3 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 61.15 |
| Shannon entropy | 0.53542 |
| G+C content | 0.49945 |
| Mean single sequence MFE | -27.87 |
| Consensus MFE | -15.70 |
| Energy contribution | -15.50 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5664119 77 - 27905053 UCUUAGUGUGGUCUACAGGCAGAUCUCUU-GUGACAGCCAAGUGCUGACACU---AGCAAAUUCUGCAAU------AUGUAUGUAUG .............((((.(((((...((.-(((.((((.....)))).))).---)).....)))))...------.))))...... ( -18.00, z-score = 0.30, R) >droSim1.chrU 5095520 86 - 15797150 -UUUGGCGAUCUAAAUACAAUGGUUUCUUAGCCUAAGUCGAGGAGCAGCGCUGCCGGCAUAGCCUGCAGCGCAGCGACGCUUAUUUG -...((((.((...........((((((..((....))..)))))).(((((((.(((...))).)))))))...))))))...... ( -32.80, z-score = -2.02, R) >droSec1.super_104 52369 86 + 95517 -CUUGGCGAUCUACAUACAAUGGUUUCUUAGCCUAAGUCGAGGAGCAGCGCUGCCGGCAUAGCCUGCAGCGCAGCGACGCUUAUAUG -...((((.((...........((((((..((....))..)))))).(((((((.(((...))).)))))))...))))))...... ( -32.80, z-score = -1.85, R) >consensus _CUUGGCGAUCUAAAUACAAUGGUUUCUUAGCCUAAGUCGAGGAGCAGCGCUGCCGGCAUAGCCUGCAGCGCAGCGACGCUUAUAUG .....(((..............(((((((.((....)).))))))).(((((((.((.....)).))))))).....)))....... (-15.70 = -15.50 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:30 2011