| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,663,090 – 5,663,171 |
| Length | 81 |
| Max. P | 0.890781 |
| Location | 5,663,090 – 5,663,171 |
|---|---|
| Length | 81 |
| Sequences | 12 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 84.03 |
| Shannon entropy | 0.34539 |
| G+C content | 0.47211 |
| Mean single sequence MFE | -24.92 |
| Consensus MFE | -18.01 |
| Energy contribution | -18.18 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5663090 81 + 27905053 CGAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCCGCCGUGUCCUUAGAGC-AGGGCAUGC-------------- ......(((.(((((........)))))...(((((....)))))........)))..((((((((......-)))))))).-------------- ( -25.60, z-score = -2.31, R) >droSim1.chr3R 11834528 81 - 27517382 CGAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCCGCCGUGUCCUUAGAGC-AGGGCAUGC-------------- ......(((.(((((........)))))...(((((....)))))........)))..((((((((......-)))))))).-------------- ( -25.60, z-score = -2.31, R) >droSec1.super_0 4878978 81 - 21120651 CGAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCCGCCGUGUCCUUAGAGC-AGGGCAUGC-------------- ......(((.(((((........)))))...(((((....)))))........)))..((((((((......-)))))))).-------------- ( -25.60, z-score = -2.31, R) >droYak2.chr3R 9710541 83 + 28832112 CGAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCCGCCGUGUCCUUAGAGCUGGGGCAUGUU------------- ......(((.(((((........)))))...(((((....)))))........)))..((((((((.......))))))))..------------- ( -26.00, z-score = -1.79, R) >droEre2.scaffold_4770 1803667 81 - 17746568 CGAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCCGCCGUGUCCUUAGAGC-AGGGCAUGC-------------- ......(((.(((((........)))))...(((((....)))))........)))..((((((((......-)))))))).-------------- ( -25.60, z-score = -2.31, R) >droAna3.scaffold_13340 6224933 81 + 23697760 CGAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCCGCCGUGUCCUUAGAUC-GGGGCAUGU-------------- ......(((.(((((........)))))...(((((....)))))........)))..((((((((......-)))))))).-------------- ( -25.80, z-score = -2.63, R) >dp4.chr2 18372112 81 - 30794189 CCAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCCGCCGUGUCCUGAGAGC-GGGGCAUGU-------------- ......(((.(((((........)))))...(((((....)))))........)))..(((((((((....)-)))))))).-------------- ( -28.20, z-score = -2.76, R) >droPer1.super_0 8052022 81 + 11822988 CCAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCCGCCGUGUCCUGAGAGC-GGGGCAUGU-------------- ......(((.(((((........)))))...(((((....)))))........)))..(((((((((....)-)))))))).-------------- ( -28.20, z-score = -2.76, R) >droWil1.scaffold_181130 203220 93 - 16660200 UGAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCAGCCGUGUCCUGUGUGUGUGUGUGUGUGCCGAGCAUGU--- .((.(((((.(((((........)))))...(((((....)))))...........))))).))..((((.((.((......)))).))))..--- ( -21.90, z-score = 0.81, R) >droVir3.scaffold_13047 8343113 96 - 19223366 UGAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAGAGCAGCCGCCGUGUCCUCUGCUCGCGUUCAUUGGGUUGUUAUUUUUU .((((((((((((((........)).((...(((((....)))))...((((((............))))))))........)))))))))))).. ( -24.20, z-score = -0.36, R) >droMoj3.scaffold_6540 30900594 96 + 34148556 CGAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCCGCCGUGUCCUGUGCUCGCGUUCAUUGGGCUCUUAUUAUGA ....(((((.(((((........)))))...(((((....)))))...........)))))((((.(((........))).))))........... ( -23.40, z-score = 0.16, R) >droGri2.scaffold_14624 3549200 66 - 4233967 CGAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCCGCCGUGUCCU------------------------------ .((.(((((.(((((........)))))...(((((....)))))...........))))).))..------------------------------ ( -18.90, z-score = -2.91, R) >consensus CGAAAUGGCAGCUGUAAAAAAUCACAGCAUCAGCAUAAAAGUGCUUAAAAGCAGCCGCCGUGUCCUUAGAGC_AGGGCAUGU______________ .((.(((((.(((((........)))))...(((((....)))))...........))))).))................................ (-18.01 = -18.18 + 0.17)
| Location | 5,663,090 – 5,663,171 |
|---|---|
| Length | 81 |
| Sequences | 12 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 84.03 |
| Shannon entropy | 0.34539 |
| G+C content | 0.47211 |
| Mean single sequence MFE | -22.12 |
| Consensus MFE | -19.62 |
| Energy contribution | -19.71 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.874492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5663090 81 - 27905053 --------------GCAUGCCCU-GCUCUAAGGACACGGCGGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUCG --------------...((.(((-......))).)).(((((((((.....((((......))))...)).((((....)))))))))))...... ( -23.40, z-score = -1.53, R) >droSim1.chr3R 11834528 81 + 27517382 --------------GCAUGCCCU-GCUCUAAGGACACGGCGGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUCG --------------...((.(((-......))).)).(((((((((.....((((......))))...)).((((....)))))))))))...... ( -23.40, z-score = -1.53, R) >droSec1.super_0 4878978 81 + 21120651 --------------GCAUGCCCU-GCUCUAAGGACACGGCGGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUCG --------------...((.(((-......))).)).(((((((((.....((((......))))...)).((((....)))))))))))...... ( -23.40, z-score = -1.53, R) >droYak2.chr3R 9710541 83 - 28832112 -------------AACAUGCCCCAGCUCUAAGGACACGGCGGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUCG -------------.....(((((........))....)))(((........((((......))))...(((((((....))))))).)))...... ( -20.90, z-score = -0.81, R) >droEre2.scaffold_4770 1803667 81 + 17746568 --------------GCAUGCCCU-GCUCUAAGGACACGGCGGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUCG --------------...((.(((-......))).)).(((((((((.....((((......))))...)).((((....)))))))))))...... ( -23.40, z-score = -1.53, R) >droAna3.scaffold_13340 6224933 81 - 23697760 --------------ACAUGCCCC-GAUCUAAGGACACGGCGGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUCG --------------....(((((-.......))....)))(((........((((......))))...(((((((....))))))).)))...... ( -21.30, z-score = -1.64, R) >dp4.chr2 18372112 81 + 30794189 --------------ACAUGCCCC-GCUCUCAGGACACGGCGGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUGG --------------....(((((-.......))....)))(((........((((......))))...(((((((....))))))).)))...... ( -21.30, z-score = -0.67, R) >droPer1.super_0 8052022 81 - 11822988 --------------ACAUGCCCC-GCUCUCAGGACACGGCGGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUGG --------------....(((((-.......))....)))(((........((((......))))...(((((((....))))))).)))...... ( -21.30, z-score = -0.67, R) >droWil1.scaffold_181130 203220 93 + 16660200 ---ACAUGCUCGGCACACACACACACACACAGGACACGGCUGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUCA ---........((((.....................((((((((.......)))).......))))..(((((((....)))))))))))...... ( -21.61, z-score = -1.17, R) >droVir3.scaffold_13047 8343113 96 + 19223366 AAAAAAUAACAACCCAAUGAACGCGAGCAGAGGACACGGCGGCUGCUCUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUCA .................((((.((((((((..(......)..))))))...((((......))))...(((((((....))))))).))...)))) ( -23.20, z-score = -0.78, R) >droMoj3.scaffold_6540 30900594 96 - 34148556 UCAUAAUAAGAGCCCAAUGAACGCGAGCACAGGACACGGCGGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUCG .........(((((...((..(....)..))......)))(((........((((......))))...(((((((....))))))).)))...)). ( -22.20, z-score = 0.01, R) >droGri2.scaffold_14624 3549200 66 + 4233967 ------------------------------AGGACACGGCGGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUCG ------------------------------.......(((((((((.....((((......))))...)).((((....)))))))))))...... ( -20.00, z-score = -2.50, R) >consensus ______________ACAUGCCCC_GCUCUAAGGACACGGCGGCUGCUUUUAAGCACUUUUAUGCUGAUGCUGUGAUUUUUUACAGCUGCCAUUUCG .....................................(((((((((.....((((......))))...)).((((....)))))))))))...... (-19.62 = -19.71 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:29 2011