| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,616,734 – 5,616,836 |
| Length | 102 |
| Max. P | 0.846670 |
| Location | 5,616,734 – 5,616,836 |
|---|---|
| Length | 102 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 58.88 |
| Shannon entropy | 0.83981 |
| G+C content | 0.44239 |
| Mean single sequence MFE | -27.34 |
| Consensus MFE | -9.32 |
| Energy contribution | -8.86 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 2.07 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.846670 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5616734 102 - 27905053 -------UGAUUACAUUGAGAAACCAGGACAAUGAGAACGGAGGCAGCGGUCAGUUGUUUCCUGUUGGUAUUGCACAGGGUAUGCUGUCAGAGCGGCAACGAUGAGUCC------ -------.((((.(((((....(((.(..(((((..((((((((((((.....))))))))).)))..)))))..)..))).((((((....)))))).))))))))).------ ( -35.60, z-score = -2.81, R) >droSim1.chr3R 11771506 102 + 27517382 -------UGAUUACAUUGAGAAACCAGGGCAAUGAGAACGGAGGCAGCGGUCAGUUGUUUCCUGUUGGUAUUGCACAGGGUAUGCUGUCAGAGUGGCAGCGAUGAGUCC------ -------.((((.((((.....(((..(((((((..((((((((((((.....))))))))).)))..)))))).)..)))..((((((.....)))))))))))))).------ ( -40.30, z-score = -3.99, R) >droSec1.super_0 4832765 102 + 21120651 -------UAAUUACAUUGAGAAACCAGGACAAUGAGAACGGAGGCAGCGGUCAGUUGUUUCCUGUUGGUAUUGCACACGGUAUGCUGUCAGAGUGGCAGCGAUGAGUCC------ -------......((((.....(((.(..(((((..((((((((((((.....))))))))).)))..)))))..)..)))..((((((.....)))))))))).....------ ( -33.10, z-score = -2.11, R) >droYak2.chr3R 9663377 102 - 28832112 -------GAGCUCCAUAGAGAAACAAGGACAAUGAGAACGGAGGCAGCGGUCAGUUGUUUUCUGUUGGUAUUGCACAGUGUGUGCUGUCAGAGCGGCAGCGAGGAGUCC------ -------..(((((........(((.(..(((((..((((((((((((.....)))).))))))))..)))))..)..))).(((((((.....))))))).)))))..------ ( -34.90, z-score = -1.94, R) >droEre2.scaffold_4770 1758122 102 + 17746568 -------CCGCUCUAUAAAGAAACCAGGACAAUGAGAACGGAGGCAGCGGUCAGUUGUUUUCUGUUGGCUCUGCACAGCGUGUGCUGCCAGAGCGGCAGCGAGGAGUCC------ -------(((((((......................((((((((((((.....)))).))))))))(((...((((.....)))).)))))))))).............------ ( -34.20, z-score = -0.18, R) >droAna3.scaffold_13340 6180663 109 - 23697760 GCAUAAAAAGCCUAGGAGGCAGAUAACAAAAAUGGUGAAUGUCGCGACAGUCGGUUGCCUCCUGCUACUAUUCAACAGAGUAUGCUGCGAGAGCGAAAACGAGGACCAC------ (((((...(((..(((((((((....((....)).(((.(((....))).))).))))))))))))....(((....))))))))(((....)))..............------ ( -27.10, z-score = -0.58, R) >dp4.chr2 18325169 93 + 30794189 ----------------UGGAAAAGAAGAGCAAUGAAAACAGGCACAAUAAUCAGUUGUUGCUUAUUGAUAUUUAAUAAUGUGUGCUGCCAGAGUGGUAGUGAACAAAAA------ ----------------.......(((...(((((......((((((((.....)))).)))))))))...))).....(((.(((((((.....))))))).)))....------ ( -17.70, z-score = -0.65, R) >droPer1.super_0 7998108 93 - 11822988 ----------------UGGAAAAAAAGAGCAAUGAAAACAGGCACAAUAAUCAGUUGUUGCUUAUUGAUAUUUAAUAAUGUGUGCUGCCAGAGUGGUAGUGAACAAAAA------ ----------------.......(((...(((((......((((((((.....)))).)))))))))...))).....(((.(((((((.....))))))).)))....------ ( -17.30, z-score = -0.59, R) >droWil1.scaffold_181089 6307364 105 - 12369635 ----------UUGUCAACAAGCAUUUACACAAUGCGGGUGAACUUCUUGUUAAGCUUUCUGUUAUUUUUAACUCCAACUGUCUGGUGUCAAAGUGGCCAAAAUGACGGAGAAUCA ----------..((..((..(((((.....)))))..))..))............(((((((((((((.....(((..((.(....).))...)))..))))))))))))).... ( -21.10, z-score = 0.28, R) >droVir3.scaffold_13047 3213109 92 + 19223366 --------UAAUUAAAAAAAAAAAAGAAGCAAUGCAAUCAAAUGCAAUAGUUAGUUGUUUAUUAUUGUUAUUCCACAAUGUGUGUUGUUACCAGGACAAC--------------- --------...................(((((((((.......(((((.....)))))....((((((......)))))))))))))))...........--------------- ( -12.10, z-score = 0.39, R) >consensus _________AUUACAUAGAGAAACAAGGACAAUGAGAACGGAGGCAGCGGUCAGUUGUUUCCUGUUGGUAUUGCACAGUGUGUGCUGUCAGAGUGGCAGCGAUGAGUCC______ .......................................((..(((((.....)))))..))....................(((((((.....))))))).............. ( -9.32 = -8.86 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:26 2011