| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,612,574 – 5,612,635 |
| Length | 61 |
| Max. P | 0.826012 |
| Location | 5,612,574 – 5,612,635 |
|---|---|
| Length | 61 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 64.57 |
| Shannon entropy | 0.57381 |
| G+C content | 0.56547 |
| Mean single sequence MFE | -20.20 |
| Consensus MFE | -9.96 |
| Energy contribution | -10.03 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5612574 61 - 27905053 GACCCGGGUCACAUGGCCAUGCCAUC--------UGGCCAUCUGGCUCUUUGGCCAUCCGAUGCUUACA .....((((((.(((((((.......--------))))))).)))))).((((....))))........ ( -20.40, z-score = -1.07, R) >droSim1.chr3R 11760879 62 + 27517382 GAUGCGGGUCAGAU--CCAUCGUAGCG----AUCUGCUCGAUCAUUUCCUUGAUCUUCUCCUGCUUUA- ...(((((.(((((--((......).)----)))))...(((((......)))))....)))))....- ( -18.90, z-score = -2.43, R) >droYak2.chr3R 9659160 53 - 28832112 GACCCGGGUCACAUGCCCAUGCCAUC--------UGGCCAGC--------UGGCCAUCCGAUGCUUACA .....((((.....))))..((.(((--------(((((...--------.)))))...)))))..... ( -16.50, z-score = -0.58, R) >droEre2.scaffold_4770 1753919 69 + 17746568 GACCCGGGUCACAUGCCCAUGCCAUCUGGUCAGUUGGCCAGUUGGCUAUUUGGCCAUCCGAUGCUUACA .....(.(((..(((.(((.((((.((((((....)))))).))))....))).)))..))).)..... ( -25.00, z-score = -1.30, R) >consensus GACCCGGGUCACAUGCCCAUGCCAUC________UGGCCAGCUGGCUCUUUGGCCAUCCGAUGCUUACA ....(((((..(((....)))..............((((((........)))))))))))......... ( -9.96 = -10.03 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:25 2011