| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,565,908 – 5,565,972 |
| Length | 64 |
| Max. P | 0.697448 |
| Location | 5,565,908 – 5,565,972 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 85.11 |
| Shannon entropy | 0.25209 |
| G+C content | 0.41754 |
| Mean single sequence MFE | -13.64 |
| Consensus MFE | -8.38 |
| Energy contribution | -9.70 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.697448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5565908 64 + 27905053 GAUAUUAACCCCUAUUUUAGAUGUCCUUGUCCAUAGGCUUGCGUGUCCACAUCGACAUCACUAA ...................((((((..(((..(((.(....).)))..)))..))))))..... ( -12.70, z-score = -2.17, R) >droSim1.chr3R 11741496 64 - 27517382 GAUAUUAACCCCUAUUUUAGAUGUCCUUGUCCAUAGGCUUGCCUGUCCACAUCGACAUCACUAA ...................((((((..(((..(((((....)))))..)))..))))))..... ( -17.10, z-score = -4.69, R) >droSec1.super_0 4781538 64 - 21120651 GAUAUUAACCCCUCUUUUAGAUGUCCUUGUCCAUAGGCUUGCCUGUCCACAUCGACAUCACUAA ...................((((((..(((..(((((....)))))..)))..))))))..... ( -17.10, z-score = -4.74, R) >droYak2.chr3R 9612926 62 + 28832112 GAUGUUAACCCUUAUUUUAGAUGUCCUUGUGG--GGGCUUGACCAUCCACAUCAACACCACUAA (((((((((((((((...((.....)).))))--))).)))).))))................. ( -13.30, z-score = -0.62, R) >droEre2.scaffold_4770 1707765 62 - 17746568 GAUAUUAACCCUUAUUUUAGAUGUUCUUGGUG--GGGCUUGACCAUCCAUAUAAACACCACUAA ...................(.((((..(((((--(.......))).)))....)))).)..... ( -8.00, z-score = 0.82, R) >consensus GAUAUUAACCCCUAUUUUAGAUGUCCUUGUCCAUAGGCUUGCCUGUCCACAUCGACAUCACUAA ...................((((((..(((..(((((....)))))..)))..))))))..... ( -8.38 = -9.70 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:23 2011