| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,536,273 – 5,536,370 |
| Length | 97 |
| Max. P | 0.821905 |
| Location | 5,536,273 – 5,536,370 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 98.63 |
| Shannon entropy | 0.01893 |
| G+C content | 0.36426 |
| Mean single sequence MFE | -21.77 |
| Consensus MFE | -21.20 |
| Energy contribution | -21.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5536273 97 + 27905053 GAUUGGAUUCGAUUCGAAUCGAGUCGAUUUAAAUAUAUAACACAAUCACAAUAGGGACCGCGAGUAUAGCAUUAGUAUUAUAGUAGCUAUAAGGUGU (((((((((((((....))))))))...(((......)))..))))).........(((.....((((((((((......)))).)))))).))).. ( -21.90, z-score = -2.05, R) >droSec1.super_0 4752094 97 - 21120651 GAUUGGAUUCGAUUCGAAUCGAGUCGAUUUAAAUAUAUAACACAAUCACAAUAGGGCCCGCGAGUAUAGCAUUAGUAUUAUAGUGGCUAUAAGGUGU ((((.((((((...)))))).)))).....................(((.....(((((...(((((.......)))))...).)))).....))). ( -21.70, z-score = -1.23, R) >droSim1.chr3R 11711339 97 - 27517382 GAUUGGAUUCGAUUCGAAUCGAGUCGAUUUAAAUAUAUAACACAAUCACAAUAGGGCCCGCGAGUAUAGCAUUAGUAUUAUAGUGGCUAUAAGGUGU ((((.((((((...)))))).)))).....................(((.....(((((...(((((.......)))))...).)))).....))). ( -21.70, z-score = -1.23, R) >consensus GAUUGGAUUCGAUUCGAAUCGAGUCGAUUUAAAUAUAUAACACAAUCACAAUAGGGCCCGCGAGUAUAGCAUUAGUAUUAUAGUGGCUAUAAGGUGU (((((((((((((....))))))))...(((......)))..)))))...........(((...((((((((((......)))).))))))..))). (-21.20 = -21.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:19 2011