| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,813,626 – 6,813,719 |
| Length | 93 |
| Max. P | 0.914964 |
| Location | 6,813,626 – 6,813,719 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 71.07 |
| Shannon entropy | 0.59047 |
| G+C content | 0.50704 |
| Mean single sequence MFE | -32.28 |
| Consensus MFE | -11.13 |
| Energy contribution | -14.01 |
| Covariance contribution | 2.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6813626 93 - 23011544 AACACGCAACAGCAGCUGUAACUUCAAAGAGC-AAAAGCCCCGAUUCCGUUG-G--CUUUAUGAAGGUUGCGUGACUUCUGGCCAUCUGGCCAGAGA------ ..((((((((..(((((.(........).)))-.((((((.((....))..)-)--)))).))...))))))))..((((((((....)))))))).------ ( -38.60, z-score = -4.34, R) >droSim1.chr2L 6614541 93 - 22036055 AACACGCAACAGCAGCUGUAACUUCAAAGAGC-AAAAGCCCCGAUUCCGAUG-G--CUUUAUGAAGGUUGCGUGACUUCUGGCCAUCUGGCCACAGA------ ..((((((((..(((((.(........).)))-.((((((.((....))..)-)--)))).))...)))))))).((..(((((....))))).)).------ ( -33.40, z-score = -3.07, R) >droSec1.super_3 2352907 93 - 7220098 AACACGAAACAGCAGCUGUAACUUCAAAGAGC-AAAAGCCCCGAUUCCGUUG-G--CUUUAUGAAGGUUGCGUGACUUCUGGCCAUCUGGCCACAGA------ ..((((.(((..(((((.(........).)))-.((((((.((....))..)-)--)))).))...))).)))).((..(((((....))))).)).------ ( -26.80, z-score = -1.11, R) >droYak2.chr2L 16230894 92 + 22324452 AACACGCAACAGCAGCUGUAACUUCAAAGAGGAAAAAGCCCCGAUUCCGAUG-G--CUUUAUGAAGGUUGCGUGACUUCUGCCCAUCUGGCCAGA-------- ..((((((((..((.......((((...))))..((((((.((....))..)-)--)))).))...))))))))...((((.((....)).))))-------- ( -28.50, z-score = -1.87, R) >droEre2.scaffold_4929 15730067 99 - 26641161 AACACGCAACAGCAGCUGUAACUUCAAAGAGG-AAAAGCCCCGAUUCCGGUG-G--CUUUAUGAAGGUUGCGUGACUUCUGCCCAUCUGGCCAUCUGGCCGGA ..((((((((..((.......((((...))))-.(((((((((....))).)-)--)))).))...))))))))...........(((((((....))))))) ( -40.00, z-score = -3.26, R) >droAna3.scaffold_12916 8399117 99 - 16180835 AACACGCAACAUCUGCUGUAACUUCAAAGAGG-AAAAGCCCCGAUUCUGAUC-G--UAUUAUGACGGUUGCGUGACUUUUGGCCAUCUGGCCAUCUGCUCAGA ..((((((((....(((....(((....))).-...)))..((((....)))-)--..........)))))))).....(((((....))))).......... ( -27.80, z-score = -1.54, R) >droWil1.scaffold_180772 6952676 74 - 8906247 -------------------AACAUGCAACA---AGCAGGCAAGUUUUAGUUG-AAUUUUUAUGUUGGUUGCGUGACUGGUGGCCAUAUGGCUAAAGA------ -------------------..((((((((.---((((...((((((.....)-)))))...)))).)))))))).((..(((((....))))).)).------ ( -25.00, z-score = -2.93, R) >droVir3.scaffold_12963 5329044 96 + 20206255 ---AACCAGCCGCUCGCCCAAUAUGUGAGCCG-AGUCGCGCCGAGCGUGUGGUGCGCUUUAUGGCGGUUGCGUGACUGGUGGCCAUCUGGCAGUCGGAAC--- ---((((.(((((((((.......)))))).(-((.(((((((......))))))))))...)))))))......((((..(((....)))..))))...--- ( -38.10, z-score = -0.05, R) >consensus AACACGCAACAGCAGCUGUAACUUCAAAGAGG_AAAAGCCCCGAUUCCGUUG_G__CUUUAUGAAGGUUGCGUGACUUCUGGCCAUCUGGCCAUAGA______ ..((((((((.((....))..(((((.((((.........................)))).))))))))))))).....(((((....))))).......... (-11.13 = -14.01 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:11 2011