| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,534,527 – 5,534,630 |
| Length | 103 |
| Max. P | 0.641028 |
| Location | 5,534,527 – 5,534,630 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 65.10 |
| Shannon entropy | 0.59446 |
| G+C content | 0.60937 |
| Mean single sequence MFE | -32.30 |
| Consensus MFE | -16.96 |
| Energy contribution | -16.80 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.65 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.641028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5534527 103 - 27905053 ACAAUCUCGCCAAUGCGUCUCACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCC---UACAGCAGCAGAUGCAGCUCCAGCUGCAGCCGCAGCAACAGCGGGA----------- ....((((((...((((.((.......)).))))......((..((((.(((((...---..)))..))...((((((....))))))))))..))....))))))----------- ( -36.30, z-score = -1.91, R) >droSim1.chr3R 11709581 103 + 27517382 ACAAUCUCGCCAAUGCGUCCAACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCC---UACAGCAGCAGAUGCAGCUCCAGCUGCAGCCGCAGCAACAGCGGGA----------- ....((((((...((((.(.........).))))......((..((((.(((((...---..)))..))...((((((....))))))))))..))....))))))----------- ( -34.60, z-score = -1.61, R) >droSec1.super_0 4750134 91 + 21120651 ACAAUCUCGCCAAUGCGUCCAACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCC---UACAGCAGCAGAUGCAGCCGCAGCAACAGCGGGA----------------------- ....((((((...((((.(.........).))))......((..((((.((.((...---..)))).((....)).))))..))....))))))----------------------- ( -25.30, z-score = -0.44, R) >droYak2.chr3R 9581015 103 - 28832112 ACAAUCUCGCCAAUGCAUCCCACAACCAGUCGCAGUCCCAGCACCGUCAGCCUGUCC---AUCAGCAGCAGAUGCAGCUUCAGCUGCAGCCGCAGCAACAUCGGGA----------- ........((....)).((((..........(((((...(((..((((.((.(((..---....))))).))))..)))...))))).((....))......))))----------- ( -25.20, z-score = -0.33, R) >anoGam1.chr2R 16239739 114 + 62725911 ---AUUGUUUCAACUAGCGGCGCAGGUAGUGGCAAGCGCAAUCGGAACAAUUCGCCCGCUUCGGGCGGCUCGUACGGUUCCAGUUCGCGUCUGGGGACGAACGCAAACGACGGCGAA ---.((((....((((.(......).)))).)))).(((..(((((((...(((((((...)))))))........))))).(((.((((.((....)).)))).)))))..))).. ( -40.10, z-score = 0.17, R) >consensus ACAAUCUCGCCAAUGCGUCCCACAACCAGUCGCAGUCCCAGCACCGGCAGCCUGUCC___UACAGCAGCAGAUGCAGCUCCAGCUGCAGCCGCAGCAACAGCGGGA___________ ....((((((...((((((.........((((..(......)..))))...((((.........))))..))))))......(((((....)))))....))))))........... (-16.96 = -16.80 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:18 2011