| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,528,096 – 5,528,165 |
| Length | 69 |
| Max. P | 0.894521 |
| Location | 5,528,096 – 5,528,165 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 65.31 |
| Shannon entropy | 0.57718 |
| G+C content | 0.59234 |
| Mean single sequence MFE | -24.44 |
| Consensus MFE | -14.68 |
| Energy contribution | -14.20 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5528096 69 - 27905053 UCC--GCUUGA----ACUGGCACCGUGCGCUUUUGAGUGCAUGCC-GUGCUAGUGACGAAGGUCGCUUC--UCCUGCC- ...--((..((----((((((((((((((((....))))))))..-))))))))(((....))).....--))..)).- ( -29.00, z-score = -3.39, R) >droAna3.scaffold_13250 58211 70 - 3535662 UCCGGGGUUGA----ACUCGCGCGGUGCGC-ACUGGAUGCAUGCA-GUGUCAGUGACGAAGGUCGUUUU--CUUUCUC- ...((((..((----(..(((((...))))-(((((.((....))-...)))))(((....))))..))--)..))))- ( -20.50, z-score = 0.41, R) >droSec1.super_0 4743815 68 + 21120651 UCC--GCCUGA----AUUGGCACCGCGCGCUCUUGAGUGCAUGUC-GUGCUAGUGACGAAGGUCGCUUC--UCCUGC-- ...--((..((----..((((((.(((((((....)))))..)).-))))))(((((....)))))...--))..))-- ( -23.80, z-score = -1.18, R) >droSim1.chr3R 11702756 69 + 27517382 UCC--GCCUGA----AUUGGCACCGCGCGCUCUUGAGUGCAUGUC-GUGCUAGUGACGAAGGUCGCUUC--UCCUGCC- ...--((..((----..((((((.(((((((....)))))..)).-))))))(((((....)))))...--))..)).- ( -24.60, z-score = -1.53, R) >droMoj3.scaffold_6540 33938624 77 - 34148556 -GCAGGGCCAAGGACAGUGGCAAUGCGUGC-UCCGAUUGACUGUACUUGCUGUUGGCAUUGGCCUCUUCAGGGUCGUCG -(.((((((((...(((..((((...((((-...........))))))))..)))...)))))).)).).......... ( -24.30, z-score = 0.49, R) >consensus UCC__GCCUGA____ACUGGCACCGCGCGCUCUUGAGUGCAUGUC_GUGCUAGUGACGAAGGUCGCUUC__UCCUGCC_ ...............((((((((((.(((((....))))).))...))))))))(((....)))............... (-14.68 = -14.20 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:17 2011