| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,505,266 – 5,505,360 |
| Length | 94 |
| Max. P | 0.715791 |
| Location | 5,505,266 – 5,505,360 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 73.50 |
| Shannon entropy | 0.54736 |
| G+C content | 0.28706 |
| Mean single sequence MFE | -14.75 |
| Consensus MFE | -11.92 |
| Energy contribution | -11.40 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.33 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5505266 94 + 27905053 ------AGAAUUUAACAAC-----C---AGAGGAAAGCUACAACCAAUUUAUUGCAAAAAUCA-GUUUGCAGUUUAUUA-UUUUU-GUUUCCUGUAAAUAAAGGAAAUUAA ------.............-----.---.................(((..((((((((.....-.))))))))..))).-.....-(((((((........)))))))... ( -14.30, z-score = -0.62, R) >droSim1.chr3R 11687490 94 - 27517382 ------AGAAUUUAACAAC-----C---AGAGGAAAGCUACAACCAAUUUAUUGCAAAAAUCA-GUUUGCAGUUUAUUA-UUUUU-GUUUCCUGUAAAUAAAGGAAAUUAA ------.............-----.---.................(((..((((((((.....-.))))))))..))).-.....-(((((((........)))))))... ( -14.30, z-score = -0.62, R) >droSec1.super_0 4728563 94 - 21120651 ------AGAAUUUAACAAC-----C---AGAGGAAAGCUACAACCAAUUUAUUGCAAAAAUCA-GUUUGCAGUUUAUUA-UUUUU-GUUUCCUGUAAAUAAAGGAAAUUAA ------.............-----.---.................(((..((((((((.....-.))))))))..))).-.....-(((((((........)))))))... ( -14.30, z-score = -0.62, R) >droYak2.chr3R 9559033 94 + 28832112 ------AGAAUUUAACAAC-----C---AGAGGAAAGCUACAACCAAUUUAUUGCAAAAAUCA-GUUUGCAGUUUAUUA-UUUUU-GUUUCCUGUAAAUAAAGGAAAUUAA ------.............-----.---.................(((..((((((((.....-.))))))))..))).-.....-(((((((........)))))))... ( -14.30, z-score = -0.62, R) >droEre2.scaffold_4770 1653921 94 - 17746568 ------AGAAUUUAACAAC-----C---AGAGGAAAGCUACAACCAAUUUAUUGCAAAAAUCA-GUUUGCAGUUUAUUA-UUUUU-GUUUCCUGUAAAUAAAGGAAAUUAA ------.............-----.---.................(((..((((((((.....-.))))))))..))).-.....-(((((((........)))))))... ( -14.30, z-score = -0.62, R) >droAna3.scaffold_12911 3063562 89 - 5364042 ------AGAAUUUAACCAG----------AGGAAAAGCUACAACCAAUUUAUUGCAAAG--UG-GUUUGCAAUUUAUUA-UUUUU-GUUUCCUGUAAAUAAAGGAAAUUA- ------.............----------................(((..((((((((.--..-.))))))))..))).-.....-(((((((........)))))))..- ( -14.00, z-score = -0.23, R) >dp4.chr2 25476375 98 + 30794189 ------AGAAUAUAACAACA--AGC---AGAGGAAAGCUACAACCAAUUCAUUGCAAAAAAUGUGUUUGCAGUUUAUUA-UUUUUUGUUUCCUGUAAAUAAAGGAAAUUA- ------((((((.(((..((--(((---(..((..........))....((((......))))))))))..)))...))-))))..(((((((........)))))))..- ( -15.40, z-score = -0.18, R) >droPer1.super_6 804830 98 + 6141320 ------AGAAUAUAACAACA--AGC---AGAGGAAAGCUACAACCAAUUCAUUGCAAAAAAUGUGUUUGCAGUUUAUUA-UUUUUUGUUUCCUGUAAAUAAAGGAAAUUA- ------((((((.(((..((--(((---(..((..........))....((((......))))))))))..)))...))-))))..(((((((........)))))))..- ( -15.40, z-score = -0.18, R) >droVir3.scaffold_13047 4371490 109 + 19223366 GGAUUUUCGCCACAGCAACAACAACAAAUGGAAAAAGCUACAACCAAUUCAUUGCGAAGUUAC-AUUUGCAAUUUAUUAACUUUUUGUUUCCUGUAAAUAAAGGGAAUUA- .((((..(((....)).............(((((...........(((..((((((((.....-.))))))))..))).........)))))..........)..)))).- ( -16.55, z-score = -0.22, R) >droMoj3.scaffold_6540 12154640 105 - 34148556 GGAUUUUCAUCCCAAUAACUAAAAC---UGGAAAAAGCUACAACCAAUUCAUUGCGAAGUUUC-AUUUGCAAUUUAUUA-UUUUUUGUUUCCUGUAAAUAAAGGGAAUUA- ((((....)))).............---.................(((..((((((((.....-.))))))))..))).-......(((((((........)))))))..- ( -15.60, z-score = -0.21, R) >droGri2.scaffold_14906 9857493 103 + 14172833 GGAUUUUCGCCACAACAGC---AAC---UGGACAAAGCUACAACCAAUUCAUUGCGAAGUUUC-AUUUGCAAUUUAUUAAUUUUUUGUUUCCUGUAAAUAAAGGAAAUUA- ((......((.....(((.---..)---))......)).....))(((..((((((((.....-.))))))))..)))........(((((((........)))))))..- ( -15.80, z-score = -0.26, R) >triCas2.ChLG1X 2602656 79 + 8109244 ------------------------CGAGACUGCCAAGCAGAAAAUAGGUUUUUGUGCGAAUCA---UCAGAAUUCCUACAUUUUGGGUCAAGUGUGUAAAAUUUAA----- ------------------------...((((.....(((.((((.....)))).)))......---.((((((......)))))))))).................----- ( -12.70, z-score = 0.42, R) >consensus ______AGAAUUUAACAAC_____C___AGAGGAAAGCUACAACCAAUUUAUUGCAAAAAUCA_GUUUGCAGUUUAUUA_UUUUU_GUUUCCUGUAAAUAAAGGAAAUUA_ .............................................(((..((((((((.......))))))))..)))........(((((((........)))))))... (-11.92 = -11.40 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:16 2011