| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,483,569 – 5,483,659 |
| Length | 90 |
| Max. P | 0.724217 |
| Location | 5,483,569 – 5,483,659 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 50.71 |
| Shannon entropy | 0.93220 |
| G+C content | 0.48719 |
| Mean single sequence MFE | -25.22 |
| Consensus MFE | 0.00 |
| Energy contribution | 0.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 0.00 |
| Mean z-score | -2.89 |
| Structure conservation index | -0.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5483569 90 - 27905053 CAAGGAG---GAUAGUCUAAAU-GUAGUAUGAUCCAGGAGCAAUGCUCCUGUGCGAUCGCACAACUUACUAUAUUGAAUAACUUCCUCCACUGC-- ...((((---((.(((...(((-((((((.(....((((((...))))))((((....))))..).))))))))).....))))))))).....-- ( -34.30, z-score = -5.48, R) >droEre2.scaffold_4770 1632110 74 + 17746568 CAAGGAG---GCUAGUCUAAAUGGUAGUAUGAUCCAGGAGCAAUGCUCCUCUAGGAUCCCACAUCUUCCUCCACUGC------------------- ...((((---(..((......(((......(((((((((((...))))))...))))))))...)).))))).....------------------- ( -23.20, z-score = -1.55, R) >droYak2.chr3R 9537115 90 - 28832112 CACGGAG---GCUAGUCUAAAU-GUAGUAUGACCCAGGAGCAAUGCUCCAGUGGGAUCCCACAUCUUACUAUAUUGACAAACUUCCUCCACUGC-- ...((((---(..(((...(((-((((((.((....(((((...))))).((((....)))).)).))))))))).....))).))))).....-- ( -34.20, z-score = -4.62, R) >droSec1.super_0 4707033 90 + 21120651 CAUGGAG---GAUAGUCCAAAU-GUAGUAUGAUCCAGGAGCAAUGCUCCUGUACGAUCGCACAACUUACUAUAUGGAAAAACUUCCUCCACUGC-- ..(((((---((...((((..(-((((((((((((((((((...)))))))...))))).......)))))))))))......)))))))....-- ( -33.91, z-score = -5.37, R) >droSim1.chr3R 11665480 93 + 27517382 CAUGGAGCCAUAUUGACUAAAU-GUAGUAUGAUCCAGGAGCAAUGCUCCUGUACUUUCGCACAACUUACUAUAUUGAAAAACUUCCUCCACUGC-- ..(((((............(((-(((((((((..(((((((...))))))).....))).......)))))))))..........)))))....-- ( -21.76, z-score = -2.44, R) >dp4.chr2 25693820 72 - 30794189 ----GAG---AAUGCCCUCAAC-ACGAUCAAGCCGGCGCACAUAGCCACCGUGCGUAAGCUGGGACGACCCCCGCAUCUC---------------- ----(((---(.(((.......-.......(((..((((((.........))))))..)))(((......))))))))))---------------- ( -23.40, z-score = -2.18, R) >droPer1.super_6 1036676 72 - 6141320 ----GAG---AACGCCCUCAAC-ACGAUCAAGCCGGCGCACAUAGCCACCGUGCGUAAGCUGGGACGACCCCCCCACCUC---------------- ----(((---......)))...-.......(((..((((((.........))))))..)))(((........))).....---------------- ( -19.30, z-score = -1.38, R) >droWil1.scaffold_181124 155526 90 - 180718 UAAGGAA---AAUUGU-AGAAUACCCAACCGACUUA--AUCAAUGCUGAAAUGGUUGACCUGAUGCUUCCCUAUUUUCAAUAUCCGUAAGUAUUAC ...(((.---.((((.-((((((..((((((..(((--........)))..))))))....((....))..)))))))))).)))........... ( -11.70, z-score = -0.09, R) >consensus CAAGGAG___GAUAGUCUAAAU_GUAGUAUGACCCAGGAGCAAUGCUCCUGUGCGAUCGCACAACUUACUAUAUUGACAAACUUCCUCCACUGC__ ................................................................................................ ( 0.00 = 0.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:10 2011