| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,476,924 – 5,476,976 |
| Length | 52 |
| Max. P | 0.927629 |
| Location | 5,476,924 – 5,476,976 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 95.95 |
| Shannon entropy | 0.06243 |
| G+C content | 0.40288 |
| Mean single sequence MFE | -7.50 |
| Consensus MFE | -6.97 |
| Energy contribution | -6.98 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.927629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5476924 52 + 27905053 CCUAAGGCUUUAUUAAACACUGCGAUUUCGCUACUCACAUGCCU---AAUUCUCU ....((((.............(((....))).........))))---........ ( -7.65, z-score = -2.11, R) >droSim1.chr3R 11656701 52 - 27517382 CCUAAGGCUUUAUUAAACUCUGCGAUUUCGCUACUCACAUGCCU---AAUUCUCU ....((((.............(((....))).........))))---........ ( -7.65, z-score = -2.07, R) >droSec1.super_0 4700348 52 - 21120651 CCUAAGGCUUUAUUAAACUCUGCGAUUUCGCUACUCACAUGCCU---AAUUCUCU ....((((.............(((....))).........))))---........ ( -7.65, z-score = -2.07, R) >droYak2.chr3R 9530380 55 + 28832112 CCUAAGGCUUUAUUAAACACUGCGAUUUCGCUACUCACAUGCCUCUUAAUUCUCU ....((((.............(((....))).........))))........... ( -7.05, z-score = -1.83, R) >consensus CCUAAGGCUUUAUUAAACACUGCGAUUUCGCUACUCACAUGCCU___AAUUCUCU ....((((.............(((....))).........))))........... ( -6.97 = -6.98 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:09 2011