| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,413,074 – 5,413,145 |
| Length | 71 |
| Max. P | 0.822895 |
| Location | 5,413,074 – 5,413,145 |
|---|---|
| Length | 71 |
| Sequences | 12 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 74.16 |
| Shannon entropy | 0.53398 |
| G+C content | 0.54288 |
| Mean single sequence MFE | -25.90 |
| Consensus MFE | -12.26 |
| Energy contribution | -12.13 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.65 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.822895 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5413074 71 + 27905053 -----AGCCAUCGUCAUGGCCUUGCCAUUGAGUGACCUGCUCAUGAUCGGCGGCGGCGAGAAGAAAUUGGCUGCCU -----.((((((((.(((((...))))).((((.....))))))))).)))((((((.((......)).)))))). ( -27.50, z-score = -1.43, R) >droEre2.scaffold_4770 1561053 71 - 17746568 -----AGCCAUCAACAUGGCCUUGCCAUUGAGUGACCUACUCAUGAUCGGCGGCGGCGAGAAGAAACUGGCCGCCU -----.(((((((..(((((...)))))((((((...)))))))))).)))((((((.((......)).)))))). ( -32.60, z-score = -4.21, R) >droYak2.chr3R 9464851 71 + 28832112 -----AGCCAUCGUCAUGGCCUUGCCAUUGAGUGACCUGCUCAUGAUUGGCGGCGGCGAGAAGAAACUGGCCGCCU -----.(((((....)))))...((((.(((((.....)))))....))))((((((.((......)).)))))). ( -32.90, z-score = -3.32, R) >droSec1.super_0 4636754 71 - 21120651 -----AGCCAUCGUCAUGGCCUUGCCAUUGAGUGACCUGCUCAUGAUCGGCGGCGGCGAGAAGAAACUGGCCGCCU -----.((((((((.(((((...))))).((((.....))))))))).)))((((((.((......)).)))))). ( -32.50, z-score = -2.92, R) >droSim1.chr3R 11598631 71 - 27517382 -----AGCCAUCGUCAUGGCCUUGCCAUUGAGUGACCUGCUCAUGAUCGGCGGCGGCGAGAAGAAACUGGCCGCCU -----.((((((((.(((((...))))).((((.....))))))))).)))((((((.((......)).)))))). ( -32.50, z-score = -2.92, R) >droWil1.scaffold_181130 15800387 70 + 16660200 ------AACCACGUCAUGGCUUUACCUUUGAGCGAUUUGCUGAUGCUUGGCCAUGGAGAUAAAAAAUUGGCUGCUU ------.....(..(((((((.......(.(((.....))).).....)))))))..).................. ( -14.70, z-score = -0.02, R) >dp4.chr2 9360038 65 - 30794189 -----------AGCUAUGGCCUUGCCUUUAAGCGAUCUACUUAUGCUAGGCAGUGGUGAGAAGAGGCUUGCCGCCU -----------.......((((.((...((((.......)))).)).)))).((((..((......))..)))).. ( -19.70, z-score = 0.15, R) >droPer1.super_3 3158051 65 - 7375914 -----------AGCUAUGGCCUUGCCUUUAAGCGAUCUACUUAUGCUAGGCAGUGGUGAGAAGAGGCUUGCCGCCU -----------.......((((.((...((((.......)))).)).)))).((((..((......))..)))).. ( -19.70, z-score = 0.15, R) >droAna3.scaffold_13340 15428656 76 + 23697760 AGUCUAAGCAACGCCAUGGCCUUGCCGUUGAGCGAUCUCCUUAUGUUUGGCAGCGGGGAGAAAAAGCUAGCCGCCU .(.(((.((..(((((((((...)))).)).))).(((((((.((.....))..)))))))....))))).).... ( -22.90, z-score = 0.40, R) >droMoj3.scaffold_6540 6049896 66 + 34148556 ----------GCAUAAUGGCUUUGCCAUUGAGCGAUCUGCUGCUGCUUGGCAGCGGUGAAAAGAAAUUGGCUGCCU ----------((.(((((((...))))))).)).....((((((....))))))((((..((....))..).))). ( -23.60, z-score = -1.31, R) >droVir3.scaffold_12855 5726129 71 + 10161210 -----ACACAGCAUAAUGGCUUUGCCAUUAAGCGAUCUGCUGCUACUUGGCAGCGGCGAAAAGAAAUUGGCAGCCU -----.....((.(((((((...))))))).)).....((((((....))))))((((..((....))..).))). ( -25.80, z-score = -2.18, R) >droGri2.scaffold_14906 5895414 71 - 14172833 -----AGGUAGCAUAAUGGCUCUGCCAUUGAGUGAUCUGCUGCCAUUUGGCAACGGCGAAAGGAAAUUGGCAGCCU -----((((.((.(((((((...))))))).)).))))(((((((.(((....)))(....).....))))))).. ( -26.40, z-score = -1.77, R) >consensus _____AGCCAUCGUCAUGGCCUUGCCAUUGAGCGAUCUGCUCAUGAUUGGCAGCGGCGAGAAGAAACUGGCCGCCU .................(((.(((((...((((.....))))......))))).(((.((......)).)))))). (-12.26 = -12.13 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:05 2011