| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,367,509 – 5,367,603 |
| Length | 94 |
| Max. P | 0.956084 |
| Location | 5,367,509 – 5,367,603 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 84.00 |
| Shannon entropy | 0.30200 |
| G+C content | 0.52385 |
| Mean single sequence MFE | -30.68 |
| Consensus MFE | -25.23 |
| Energy contribution | -25.77 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5367509 94 - 27905053 CCGAUUAUAUGAACUACCGAC---GUGGCGUGUGUCCGGCUCAAUCGCGGGACUAUUCCGGCAACGGAAAUGGAAAUAACAACGGACAUGGCCACAA .....................---(((((.((((((((((......))....((((((((....))).))))).........))))))))))))).. ( -33.40, z-score = -2.71, R) >droSim1.chr3R 11552022 94 + 27517382 CCGAUUAUAUGAACUACCGAC---GUGGCGUGUGUCCGGCUCAAUCGCGGGACUAUUCCGGCAACGGAAAUGGGAAUAACAACGGACACGGCCACAA .....................---(((((.((((((((((......))....((((((((....))).))))).........))))))))))))).. ( -36.10, z-score = -3.19, R) >droSec1.super_0 4591289 94 + 21120651 CCGAUUAUAUGAACUAUCGAC---GUGGCGUGUGUCCGGCUCAAUCGCGGGACUAUUCCGGGAACGGAAAUGGGAAUAACAACGGACAUGGCCACAA .((((..........))))..---(((((.((((((((((......))....((((((((....))).))))).........))))))))))))).. ( -34.20, z-score = -2.79, R) >droYak2.chr3R 9418912 94 - 28832112 CCGACUAUAUGAACUACCGAC---GUGGCGUGUGUCCGGCUCUUUCACGGGACUACUCCGGCAACGGGAAUGGUAAUAACAACGGACAUGGCCACAA .....................---(((((.((((((((.(((......)))((((.((((....))))..))))........))))))))))))).. ( -31.50, z-score = -1.87, R) >droEre2.scaffold_4770 1513345 94 + 17746568 CCGAUUAUAUGAACUACCGAC---GUGGCGUGUGUCCGGCUCUAUCGCGGGACUACUCCGGCAACGGAAAUGGUAAUAACAACGGACAUGGCCACAA .....................---(((((.((((((((((......))...((((.((((....))))..))))........))))))))))))).. ( -32.60, z-score = -2.20, R) >droWil1.scaffold_181089 7734488 91 + 12369635 CCGAUUAUAUGAACUAUCGUCGCGGUGGCAUCUGUCCACCCUUAUCACGCGAUUAUGCCGGCAGCAAUAACAACAACAGCAAUGGACACAA------ ..................((((((.((((((..((((...........).))).)))))).).))...........((....)))))....------ ( -16.30, z-score = 1.00, R) >consensus CCGAUUAUAUGAACUACCGAC___GUGGCGUGUGUCCGGCUCAAUCGCGGGACUAUUCCGGCAACGGAAAUGGGAAUAACAACGGACAUGGCCACAA ........................(((((.((((((((.(((......))).((((((((....)))).)))).........))))))))))))).. (-25.23 = -25.77 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:04 2011