| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,354,747 – 5,354,837 |
| Length | 90 |
| Max. P | 0.987852 |
| Location | 5,354,747 – 5,354,837 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 74.34 |
| Shannon entropy | 0.44332 |
| G+C content | 0.35834 |
| Mean single sequence MFE | -16.80 |
| Consensus MFE | -10.67 |
| Energy contribution | -9.39 |
| Covariance contribution | -1.28 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.30 |
| SVM RNA-class probability | 0.987852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5354747 90 - 27905053 ---CCCCAUUGUUUGC----UCGAUCAAAUGAUCUAUUUGAUCCGCAAUUAAGCAAUUAUCCACGAGCGUGUACAAUAUAGAUACAACCAUAUGUAG ---....(((((.(((----(((((((((((...))))))))).((......))..........)))))...))))).....((((......)))). ( -20.20, z-score = -3.31, R) >droSim1.chr3R 11539129 86 + 27517382 ---CCCCAUUGUUUGC----UCGAUCAAAUGAUCUAUUUGAUCCGCAAUUAAGCAAUUAUACACGAGCAUGUACUAUAUAGAUA----CAUAUGUAG ---..........(((----(((((((((((...))))))))).((......))..........)))))....(((((((....----..))))))) ( -20.40, z-score = -3.41, R) >droSec1.super_0 4578456 86 + 21120651 ---CCCCAUUGUUUGC----UCGAUCGAAUGAUCUAUUUGAUCCGCAAUUAAGCAAUUAUACACGAGCAUAUACAAUAUAGAUA----CAUAUGUAG ---....(((((.(((----(((((((((((...))))))))).((......))..........)))))...))))).....((----(....))). ( -19.80, z-score = -3.37, R) >droYak2.chr3R 9405990 74 - 28832112 CCACCCCAUUGUUUGU----UCGAUCGAAUGAUCUAUUUGAUCCGCAAUUAAGCAAUUAUCCAUCAGCAUGAACAAUU------------------- ............((((----(((((((((((...))))))))).((......))................))))))..------------------- ( -13.90, z-score = -2.20, R) >droEre2.scaffold_4770 1500344 83 + 17746568 --CCCCCAUUGUUUGU----UCGAUCGAAUGAUCUAUUUGAUCCGCAAUUAAGCAAUUAUCCAUCAGCAUGUUCAAUAUAUAUA----GAUAG---- --.....((((..(((----(.(((.((..((((.....)))).((......)).....)).)))))))....)))).......----.....---- ( -11.20, z-score = -0.56, R) >dp4.chr2 8570998 78 + 30794189 ---CCCCAUUGGUUGUUCUAUCGAUCAAGUGAUCUAUUUGAUCUGCAAUUAAGCAAUUAAACAUGCACA---AUAGUGCUUAUA------------- ---.....(((((((((..((.(((((((((...)))))))))....))..)))))))))....((((.---...)))).....------------- ( -16.60, z-score = -1.87, R) >droPer1.super_3 2371533 78 + 7375914 ---CCCCAUUGGCUGUUCUAUCGAUCAAGUGAUCUAUUUGAUCUGCAAUUAAGCAAUUAAACAUGCACA---AUAGUGCUUAUA------------- ---....((((((((((.....(((((((((...)))))))))(((......)))....)))).)).))---))..........------------- ( -15.50, z-score = -1.25, R) >consensus ___CCCCAUUGUUUGU____UCGAUCAAAUGAUCUAUUUGAUCCGCAAUUAAGCAAUUAUACAUGAGCAUGUACAAUAUAGAUA_____AUA_____ .......((((..(((......(((((((((...))))))))).((......))............)))....)))).................... (-10.67 = -9.39 + -1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:03 2011