| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,353,000 – 5,353,060 |
| Length | 60 |
| Max. P | 0.940393 |
| Location | 5,353,000 – 5,353,060 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 70.36 |
| Shannon entropy | 0.56690 |
| G+C content | 0.57180 |
| Mean single sequence MFE | -17.38 |
| Consensus MFE | -9.72 |
| Energy contribution | -9.27 |
| Covariance contribution | -0.45 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.940393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5353000 60 + 27905053 AUUGCUUUCGUCACCGGGCAUCAUCUGGUCUGGAUAAGGCGACACCUCGGGGCGGUGCUC ...((..(((((.(((((((.....))((((.....)))).....)))))))))).)).. ( -17.30, z-score = 0.04, R) >droSim1.chr3R 11537425 57 - 27517382 AUUGCUUUCGUCACCGGGCAUCAUCUGGUCUGGAUAAGGCGACACCGCCACGAGCUC--- ...((..((((..((((((........))))))....((((....))))))))))..--- ( -18.70, z-score = -1.58, R) >droSec1.super_0 4576752 57 - 21120651 AUUGCUUUCGUCACCGGGCAUCAUCUGGUCUGGAUAAGGCGGCACCGCCACGAGCUC--- ...((..((((..((((((........))))))....((((....))))))))))..--- ( -20.10, z-score = -1.68, R) >droYak2.chr3R 9404283 52 + 28832112 AUUGCUUUCGUCACCGGACCAGA---GGUCUGGAUAAGGCGACACUGCCCAGUUC----- ...((..(((((.(((((((...---)))))))....)))))....)).......----- ( -15.70, z-score = -1.09, R) >droEre2.scaffold_4770 1498623 52 - 17746568 AUUGCUUUCGUCACCGGGCAU---CUGGUCUGGAUAAGGCGACAUCGUC--GAGCUC--- ...((((......((((((..---...))))))....((((....))))--))))..--- ( -16.30, z-score = -1.25, R) >droAna3.scaffold_13340 23386421 50 + 23697760 -UUGCUUUCGUCACCAG-UACCAGUUGG---GAGCGAGUUAGCUCCCUCCCGAUU----- -................-....((((((---(((.(((....))).)))))))))----- ( -16.20, z-score = -2.81, R) >consensus AUUGCUUUCGUCACCGGGCAUCAUCUGGUCUGGAUAAGGCGACACCGCCACGAGCUC___ .(((((((.((..((((((........))))))))))))))).................. ( -9.72 = -9.27 + -0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:02 2011