| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,343,617 – 5,343,767 |
| Length | 150 |
| Max. P | 0.724566 |
| Location | 5,343,617 – 5,343,767 |
|---|---|
| Length | 150 |
| Sequences | 9 |
| Columns | 163 |
| Reading direction | forward |
| Mean pairwise identity | 76.63 |
| Shannon entropy | 0.48263 |
| G+C content | 0.45507 |
| Mean single sequence MFE | -47.77 |
| Consensus MFE | -23.29 |
| Energy contribution | -24.17 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5343617 150 + 27905053 UGUGUCUGGUAAUGUGGAGGCAGUGAGUAGUUGUGCUGUAUUCUCUUAAAGCUCU--GCUCUAUUCAUU-----AAGAUGUGCGUGUGCAUUGAGGAAGAAAG--CCAACGAAAGUUGUUCGCCACAUUACCGGCAAUG---UUGCAACAUCGGGC-GCGUUG .((((((((((((((((.(((...((((((....(((.((......)).))).))--))))..(((.((-----..((((((....))))))...)).))).)--))(((....))).....)))))))))).(((...---.)))......))))-)).... ( -50.90, z-score = -2.11, R) >droSim1.chr3R 11527995 150 - 27517382 UGUGUCUGGUAAUGUGGAGGCAGUGAGUAGUUGUGCUGUAUUCUCUUAAAGCUCU--GCUCUAUUCAUU-----AAGAUGUGCGUGUGCAUUGAGGAAGAAAG--CCAACGAAAGUUGUUCGCCACAUUACCGGCAAUG---UUGCAACAUCGGGC-GCGUUG .((((((((((((((((.(((...((((((....(((.((......)).))).))--))))..(((.((-----..((((((....))))))...)).))).)--))(((....))).....)))))))))).(((...---.)))......))))-)).... ( -50.90, z-score = -2.11, R) >droSec1.super_0 4567346 150 - 21120651 UGUGUCUGGUAAUGUGGAGGCAGUGAGUAGUUGUGCUGUAUUCUCUUAAAGCUCU--GCUCUAUUCAUU-----AAGAUGUGCGUGUGCAUUGAGGAAGAAAG--CCAACGAAAGUUGUUCGCCACAUUACCGGCAAUG---UUGCAACAUCGGGC-GCGUUG .((((((((((((((((.(((...((((((....(((.((......)).))).))--))))..(((.((-----..((((((....))))))...)).))).)--))(((....))).....)))))))))).(((...---.)))......))))-)).... ( -50.90, z-score = -2.11, R) >droYak2.chr3R 9394822 150 + 28832112 UAUGCCUGGUAAUGUGGAGGCAGUGAGUAGUUGUGCUGUAUUCUCUUAAAGCUCU--GCUCUAUUCAUU-----AAGAUGUGCGUGUGCAUUGAAGAAGAAAG--CCAACGAAAGUUGUUCGCCACAUUACCGGCAAUG---UUGCAACAUCGGGC-GUGUUG (((((((((((((((((.((((((((((((..(.(((.((......)).))).).--...)))))))))-----..((((((....))))))..........)--))(((....))).....)))))))))).(((...---.)))......))))-)))... ( -51.50, z-score = -2.67, R) >droEre2.scaffold_4770 1489166 150 - 17746568 UGUGCCUGGUAAUGUGGAGGCAGUGAGUAGUUGUGCUGUAUUCUCUUGAAGCUCU--GCUCUAUUCAUU-----AGGAUGUGCGUGUGCAUUGAAGAAGAAAG--CCAACGAAAGUUGUUCGCCACAUUACCGGCAAUG---UUGCAACAUCGGGC-GUGUCG ...((((((((((((((.((((((((((((....((.(..(((....)))...).--)).)))))))))-----..((((((....))))))..........)--))(((....))).....)))))))))).(((...---.)))......))))-...... ( -49.50, z-score = -1.37, R) >droAna3.scaffold_13340 23376918 142 + 23697760 UGUGCCUGGUAAUGUGGAGGCAGUGAGUAGUUGCGCUGUAUUCUCUUGAAGCUCU--UGUCUAUCCCCU-----GAAAUGUGCAUGUGGAUUGAAGAAGAAAG--CCAAUGAAAGUUGUUCGCCACAUUACAGGCUAUG---UUGCA--AUCGGGU------- ...((((((((((((((..((((((........))))))........((((((((--(.((.(((((.(-----(.......)).).)))).))..))))..)--)((((....))))))).)))))))))..((....---..)).--..)))))------- ( -39.60, z-score = -0.35, R) >dp4.chr2 8558764 162 - 30794189 UGCGCCAGGUAAUGUGGAGGCAGUGAGUAGUUGUGCUGUAUUCUCUUGAAGCUCUCUGCUCGAUUCAUUCGCGAAAGAUGUGCUUGUGCAUUUAAGAAGAAAAG-CCAACGAAAGUUGUCCGCCACAUUACCGGAUAUGCAGUUGCAGUCUGCAACCACGCCG .(((...((((((((((.(((..(((((((..(.(((.((......)).))).).))))))).(((.(((.(....)..((((....))))....))))))..)-))(((....))).....))))))))))((...(((((.......))))).)).))).. ( -54.70, z-score = -1.95, R) >droPer1.super_3 2359287 160 - 7375914 UGCGCCAGGUAAUGUGGAGGCAGUGAGUAGUUGUGCUGUAUUCUCUUUAAGCUCUCUGCUCGAUUCAUUCGCGAAAGAUGUGCUUGUGCAUUGAGGAGGAAAAGGCCAACGAAG--UGUCCGCCACAUUACCGGAUAUGCAGUUGCAGUCUGCAAC-ACGUCG (((.((.((((((((((.((((.(.....((((.(((...((((((((((((.(...((.(((.....)))(....)....))..).)).))))))))))...)))))))..).--)).)).))))))))))))....)))(((((.....)))))-...... ( -57.90, z-score = -2.05, R) >droGri2.scaffold_14906 4501758 142 - 14172833 UGUGCCAGGUAAUAAUAAUGGAGGCAUUACCACAAAUAUUAACUGCCCAUUUUCU---UUCGAAUGA-------AAAAUGCAAGUAAAUAAUAAAGAACAUGCAUUCCAACAAAUUUGUAUGUAUGAUAAAUGAAGCUG----CUCAGCAUAAAAG------- (((((..((((.......(((((((((.........((((.(((((...(((((.---.......))-------)))..)).))).)))).........)))).)))))....((((((.......)))))).....))----))..)))))....------- ( -24.07, z-score = -0.03, R) >consensus UGUGCCUGGUAAUGUGGAGGCAGUGAGUAGUUGUGCUGUAUUCUCUUAAAGCUCU__GCUCUAUUCAUU_____AAGAUGUGCGUGUGCAUUGAAGAAGAAAG__CCAACGAAAGUUGUUCGCCACAUUACCGGCAAUG___UUGCAACAUCGGGC_GCGUUG .......((((((((((.((.((((((((((.(.(((.((......)).))).)...)))..))))))).......((((((....))))))..............((((....)))).)).))))))))))............................... (-23.29 = -24.17 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:01 2011