| Sequence ID | dm3.chr3R |
|---|---|
| Location | 5,320,318 – 5,320,414 |
| Length | 96 |
| Max. P | 0.986944 |
| Location | 5,320,318 – 5,320,414 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 70.37 |
| Shannon entropy | 0.54590 |
| G+C content | 0.45427 |
| Mean single sequence MFE | -26.48 |
| Consensus MFE | -15.73 |
| Energy contribution | -16.26 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.986944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 5320318 96 - 27905053 UCGCUGCCUUGGGUUCACUGCGGUUUUGUUUUGAAAACACGGAACAGUGCGCAGUGGAACCUCCUUAAAAAGGUACUUUAGGGCAAAUAUACAACU ....((((((((((((((((((...((((((((......))))))))..)))))).))))).(((.....))).....)))))))........... ( -32.50, z-score = -3.01, R) >droAna3.scaffold_13340 18971131 76 + 23697760 AGGCUGCCUUGGGUGUUCUUGGUUUCUUUUUUAUUUGUAGACAGUAGAACCUACUUAAA--UAGGAAAUGAGGUAUUU------------------ ....(((((((((....))).(((((((.((((...((((..........)))).))))--.)))))))))))))...------------------ ( -14.20, z-score = 0.39, R) >droEre2.scaffold_4770 1465255 90 + 17746568 CCGCUGCCUUGGGUUCGCUUCGAUUUUGUUUUGAAAACACGGAACGGUGCGCAGUGGAACCUCCUUCAGAAGAUACCUUA-GACCAAUAUA----- ...(((....(((((((((.((...((((((((......))))))))..)).))).))))))....)))...........-..........----- ( -19.60, z-score = 0.33, R) >droYak2.chr3R 9369993 86 - 28832112 CCGCUGCCUUGGGUUCACUUCGAAUUUGUUUUGAAAACACGGAACAGUGCGCAGUGAAACCUCCUUCAGGAGCUACCUUA-AAUGAU--------- ..(((.(((.(((((((((.((...((((((((......))))))))..)).)))).))))).....)))))).......-......--------- ( -23.90, z-score = -1.74, R) >droSec1.super_0 4544094 85 + 21120651 CCGCUGCCUUGGGUUCACUGCGGUUUUGUUUCGAAAACACGGAACAGUGCGCAGUGGAACCUCCUACAAAAGGUACUUAA-GGCAA---------- ....((((((((((((((((((...((((((((......))))))))..)))))))))((((........)))).)))))-)))).---------- ( -37.00, z-score = -4.42, R) >droSim1.chr3R 11504918 95 + 27517382 CCGCUGCCUUGGGUUCACUGCGGUUUUGUUUUGAAAACACGGAACAGUGCGCAGUGGAACCUCCUUCAAAAGGUACUUUA-GGCAAAUAUACAACC ....(((((..(((((((((((...((((((((......))))))))..)))))))))((((........)))).))..)-))))........... ( -31.70, z-score = -2.62, R) >consensus CCGCUGCCUUGGGUUCACUGCGGUUUUGUUUUGAAAACACGGAACAGUGCGCAGUGGAACCUCCUUCAAAAGGUACUUUA_GGCAAA_________ ....(((((((((((((((.((...((((((((......))))))))..)).)))).))))).......))))))..................... (-15.73 = -16.26 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:01:00 2011